PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s700322g007

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

NAC

Protein Properties

Length: 140aa MW: 16480.9 Da PI: 10.1983

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s700322g007	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	152.7	1.7e-47	5	122	11	129
NAM 11 deelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvgl 102 +ee++++yL +kv + ++++ +++ evd++k+ePwdLp+k+k +ekewyfF+++d+ky+tg+r nrat+ gyWkatgkdke+++ kg lvg+ PDK_30s700322g007 5 NEEIITHYLSAKVMNPSFSA-RAMGEVDLNKCEPWDLPSKAKMGEKEWYFFCQKDRKYPTGTRINRATEYGYWKATGKDKEIYRGKGILVGM 95 69**************99.89***********99999********************************************* PP NAM 103 kktLvfykgrapkgektdWvmheyrle 129 kktLvfy+grapkgekt+Wv+he+rle PDK_30s700322g007 96 KKTLVFYRGRAPKGEKTNWVIHEFRLE 122 **********************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	43.777	1	140	IPR003441	NAC domain
Pfam	PF02365	3.7E-20	5	121	IPR003441	NAC domain
SuperFamily	SSF101941	1.57E-48	6	129	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 140 aa Download sequence Send to blast
MGVYNEEIIT HYLSAKVMNP SFSARAMGEV DLNKCEPWDL PSKAKMGEKE WYFFCQKDRK 60 YPTGTRINRA TEYGYWKATG KDKEIYRGKG ILVGMKKTLV FYRGRAPKGE KTNWVIHEFR 120 LEGRTQYHNH HRTPRVPSFP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-41	5	121	27	142	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-41	5	121	27	142	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-41	5	121	27	142	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-41	5	121	27	142	NO APICAL MERISTEM PROTEIN
3swm_A	5e-41	5	121	30	145	NAC domain-containing protein 19
3swm_B	5e-41	5	121	30	145	NAC domain-containing protein 19
3swm_C	5e-41	5	121	30	145	NAC domain-containing protein 19
3swm_D	5e-41	5	121	30	145	NAC domain-containing protein 19
3swp_A	5e-41	5	121	30	145	NAC domain-containing protein 19
3swp_B	5e-41	5	121	30	145	NAC domain-containing protein 19
3swp_C	5e-41	5	121	30	145	NAC domain-containing protein 19
3swp_D	5e-41	5	121	30	145	NAC domain-containing protein 19
4dul_A	5e-41	5	121	27	142	NAC domain-containing protein 19
4dul_B	5e-41	5	121	27	142	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008792523.1	1e-93	NAC domain-containing protein 100-like
Swissprot	Q9FK44	2e-70	NAC87_ARATH; NAC domain-containing protein 87
TrEMBL	A0A2H3Y2Q5	3e-92	A0A2H3Y2Q5_PHODC; NAC domain-containing protein 100-like
STRING	XP_008792523.1	5e-93	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1452	37	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18270.2	6e-74	Arabidopsis NAC domain containing protein 87

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]