PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s700381g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family GRAS
Protein Properties Length: 293aa    MW: 32644.7 Da    PI: 4.4906
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s700381g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS131.31e-4088286174373
               GRAS 174 vpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles...erdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262
                          ++f+   + +  +l++++L ++ +E+l+ n++  l +l++es+ ++     rd +L+++++l P++v+v+++++d++s+s+  r++ +++
  PDK_30s700381g001  88 AALRFRQ--ELASGQLDPSSLGLRDDETLVLNCQSWLRYLPEESGGIARdpsSRDGFLEFIRGLGPRIVTVTDEDSDLDSPSLTSRIMACFN 177
                        4455554..3466789****************************998877779*************************************** PP

               GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee 354
                        y +  fd+le+ lp++s +++ +E+  +g++i+n++  eg +r+er e+  +  +r+++a F+++p++e+++k++klll +++  g+ +++e
  PDK_30s700381g001 178 YLWIPFDALETFLPKDSPQKAEYEAD-VGQKIENIIGFEGGRRIERSESGVRFVQRMKRARFQSIPFDEETVKEVKLLLDEHA-SGWGMKKE 267
                        **************************.********************************************************.889999** PP

               GRAS 355 sgslvlgWkdrpLvsvSaW 373
                        ++ lvl+Wk+++ v+++aW
  PDK_30s700381g001 268 EDMLVLTWKGHSSVFTTAW 286
                        ******************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098518.2991268IPR005202Transcription factor GRAS
PfamPF035143.6E-3888286IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MEAELRGTPT SIPVSNPNLL QTPRDSLSGA LRGRLGSLDG ACIEKLLLHC ASALESNDVT  60
LAQQFRDIPF EFHVIKANSA NSGDGMDAAL RFRQELASGQ LDPSSLGLRD DETLVLNCQS  120
WLRYLPEESG GIARDPSSRD GFLEFIRGLG PRIVTVTDED SDLDSPSLTS RIMACFNYLW  180
IPFDALETFL PKDSPQKAEY EADVGQKIEN IIGFEGGRRI ERSESGVRFV QRMKRARFQS  240
IPFDEETVKE VKLLLDEHAS GWGMKKEEDM LVLTWKGHSS VFTTAWVPDG FDE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B2e-1668288268474Protein SHORT-ROOT
5b3h_B1e-1668288214420Protein SHORT-ROOT
5b3h_E1e-1668288214420Protein SHORT-ROOT
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008813173.11e-155scarecrow-like protein 32
TrEMBLA0A2H3ZFV61e-153A0A2H3ZFV6_PHODC; scarecrow-like protein 32
STRINGXP_008813173.11e-154(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122273238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.15e-57GRAS family protein