PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s701181g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family B3
Protein Properties Length: 403aa    MW: 46160.9 Da    PI: 8.8363
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s701181g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.83.5e-174663399
                       -SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                 B3 33 sktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                       s+ +tl+ +sg +W v+l  +k+ ++ +lt+GW +Fvk++ Lke +f+vF+++g++ f  +v +f++
  PDK_30s701181g001  4 SRRVTLQGPSGSKWYVQL--TKNIEGAFLTAGWPKFVKDHSLKEHEFLVFQYEGSMHF--TVLIFDT 66
                       5689**************..*********************************99999..9999986 PP
2B348.51.5e-153063851298
                        HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                 B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                        ++ rl++p  f ++h    ++ + l+l+d++g+ W v +    +s+   l++GW+ F + n+L+egD + F+l+g    e++v++fr
  PDK_30s701181g001 306 SEIRLRIPAWFSRAHLP--RKRTNLVLRDPNGKAWVVVY--IPCSRD-RLSGGWSAFSRGNNLEEGDYCAFELVG--PVEMRVHIFR 385
                        56799**********53..35568***************..666666.5999********************998..6668999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.021167IPR003340B3 DNA binding domain
PROSITE profilePS5086314.677167IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.8E-18469IPR015300DNA-binding pseudobarrel domain
PfamPF023621.4E-14466IPR003340B3 DNA binding domain
SuperFamilySSF1019362.55E-17469IPR015300DNA-binding pseudobarrel domain
CDDcd100174.63E-15465No hitNo description
SMARTSM010194.7E-12295387IPR003340B3 DNA binding domain
PROSITE profilePS5086314.41295387IPR003340B3 DNA binding domain
SuperFamilySSF1019361.96E-22297385IPR015300DNA-binding pseudobarrel domain
CDDcd100179.39E-22299385No hitNo description
Gene3DG3DSA:2.40.330.102.2E-20305385IPR015300DNA-binding pseudobarrel domain
PfamPF023629.5E-14305385IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MEASRRVTLQ GPSGSKWYVQ LTKNIEGAFL TAGWPKFVKD HSLKEHEFLV FQYEGSMHFT  60
VLIFDTTACE REDVLTVRPH RSSKSSNDRN KRGRPLKISL DVGCYVKKEA SESELTDLRN  120
DRHAPNQLQV HYSNSIQEKY ITSIGLHRIA RIHGCNVDAL AMSYILCEIV EFVVWNEHEY  180
HHCVPQMTDV EASKMVSLFP SGAPSNFMLI DTGTADLGRD ACEINPANHG LPYQYVPDVK  240
SGTGSLLLKN RQYRGYVSRR RPVTAEERAK AREDANSFTS IFPHMIMRMT AMSVYRTYML  300
VSLLSSEIRL RIPAWFSRAH LPRKRTNLVL RDPNGKAWVV VYIPCSRDRL SGGWSAFSRG  360
NNLEEGDYCA FELVGPVEMR VHIFRVVEET IPVIRMTRMQ EMH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026666185.15e-96B3 domain-containing protein Os01g0723500-like
SwissprotQ8S2E63e-49Y1235_ORYSJ; B3 domain-containing protein Os01g0723500
TrEMBLA0A3Q0IL241e-94A0A3Q0IL24_PHODC; B3 domain-containing protein Os01g0723500-like
STRINGXP_008810645.15e-95(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127923135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.13e-12B3 family protein