PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s701911g006
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family HB-other
Protein Properties Length: 251aa    MW: 26895.8 Da    PI: 7.6579
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s701911g006genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox567e-183286357
                       --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
           Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                       kR+  +++qle Le+ ++ + yps++ r+eL+ k+gL++rq ++WF+ rR k++k
  PDK_30s701911g006 32 KRQMKSPYQLELLEKTYAVETYPSEALRAELSVKTGLSDRQLQMWFCHRRLKDRK 86
                       8999*************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-161586IPR009057Homeodomain-like
SuperFamilySSF466893.04E-162586IPR009057Homeodomain-like
PROSITE profilePS5007115.032787IPR001356Homeobox domain
SMARTSM003892.9E-142991IPR001356Homeobox domain
PfamPF000461.7E-153286IPR001356Homeobox domain
CDDcd000863.74E-163286No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MEIGEGGEGK PPPEGLKKPA STPEGGEAKP PKRQMKSPYQ LELLEKTYAV ETYPSEALRA  60
ELSVKTGLSD RQLQMWFCHR RLKDRKFPPA KRQRKEEEPA AAAGGDVMMV SGAAPVGSSS  120
NPFAGGFGSG GETRKAVSRA AAAVSRIGAE TSSAGKRYYE PPPGLLLQHT PPAQPLPLSM  180
AELRVIASVE AQLGEPLRED GPILGVEFDP LPPGAFGAPI GTHMVILTIM IAYTIHEALY  240
WATIFRGFYG D
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269|PubMed:22694359, ECO:0000269|PubMed:23872538}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008811887.11e-143homeobox-DDT domain protein RLT2-like isoform X1
RefseqXP_008811888.11e-144homeobox-DDT domain protein RLT2-like isoform X2
SwissprotQ9FFH12e-44RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBLA0A2H3ZCT01e-142A0A2H3ZCT0_PHODC; homeobox-DDT domain protein RLT2-like isoform X2
TrEMBLA0A2H3ZDL31e-142A0A2H3ZDL3_PHODC; homeobox-DDT domain protein RLT2-like isoform X1
STRINGXP_008811887.11e-143(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1674079
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44180.12e-44Homeodomain-like transcriptional regulator