PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s701981g005
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family TALE
Protein Properties Length: 740aa    MW: 82974.3 Da    PI: 8.0983
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s701981g005genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.32.7e-086647021854
                        HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
           Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                        +F++  ++yp+ +e+  LA k gLt +qV++WF N R +
  PDK_30s701981g005 664 MFQNflHPYPKDNEKHLLAIKSGLTRSQVSNWFINARVR 702
                        5887779******************************88 PP
2BELL52.71.1e-175536061872
               BELL  18 eVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                        +Vd+rY+q+ +q++ vis+F ++++ g++++++++Al++iS  +++L+++i++qi
  PDK_30s701981g005 553 KVDQRYNQCIDQIHNVISAF-CATESGTSHMHAQFALHKISSVYKNLRERITSQI 606
                        7*******************.89*******************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575135No hitNo description
SMARTSM005747.1E-6441604IPR006563POX domain
PfamPF075263.7E-21446603IPR006563POX domain
PROSITE profilePS5007111.499643706IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.2E-26645719IPR009057Homeodomain-like
CDDcd000861.14E-10646707No hitNo description
SuperFamilySSF466893.59E-15646714IPR009057Homeodomain-like
SMARTSM003894.1E-5646710IPR001356Homeobox domain
PfamPF059203.2E-14663702IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 740 aa     Download sequence    Send to blast
MGPKSLAKGA TLPPSPALCL FIAPPPFSFP FSISCPRWAS YLLFFKFFGP IPQNATAVGF  60
KQLLWTRRPV PIYLVPNGFS TSMHTWRMYI LENVLYKIVG LGPNVIYGLI PVLNHRSLHE  120
CEGDASINWI LVVNGLKWPI DPFIQSSFPG RNNHRQIMAG DPLLSTFQEA QEEALSIPYL  180
ANNVDMVNGN VSYSRHMPHV GNISYDGSSG NADLREHFMG TSLPATSLVN LFSDTKCLQE  240
NIISVNAAST SSLPSKEMRT SISSDCCKTI NSSVTVSVNC EFESQDDAGL LTSEKDACLN  300
GQLNCSWCYD EVLGHEVPSG RTLTSIRPSY HELESSEPGW KSSLNFPYLF DNRVPTNQPS  360
LSLGSDQPSI ISMSNVPEKC LEASSPGMTQ VTSNNSGCPV SAELPACSHS LRNSSHDVGL  420
GLMTFPNNEK FSLYHRSSRP VHFSYVLLGS RYLHMTQQIL AEIATYAVAD SNEMNGDFSL  480
GGIEEIKSQG HVDGQQCQEV SAKKTELVTM LHLFFSRLSG KLSNRKTYNQ KKTTWFDVGN  540
CFHLWVMKRQ KAKVDQRYNQ CIDQIHNVIS AFCATESGTS HMHAQFALHK ISSVYKNLRE  600
RITSQILLIA QQCSTLWLGE EKSFESSLIQ KQWGLQQLSR SHQQSWRPQR GLPEKSVSVL  660
RAWMFQNFLH PYPKDNEKHL LAIKSGLTRS QVSNWFINAR VRLWKPMIDE MYSELKKKNQ  720
TEGSDGETRV HGNIGSQWFK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A5e-15652710563Homeobox protein Meis2
3k2a_B5e-15652710563Homeobox protein Meis2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008793176.20.0uncharacterized protein LOC103709546 isoform X2
TrEMBLA0A2H3Y4790.0A0A2H3Y479_PHODC; uncharacterized protein LOC103709546 isoform X2
STRINGXP_008793175.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31433365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.18e-74homeobox gene 1