PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s703171g006

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

bHLH

Protein Properties

Length: 420aa MW: 45996.2 Da PI: 5.7428

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s703171g006	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	21.4	4.6e-07	327	367	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri +++ L++l+P K++ a++L +A +Y+k L PDK_30s703171g006 327 ARLRRERISERLRVLQSLVPGG-----SKMDTASMLDEAANYLKFL 367 599***************95.....5**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.945	318	367	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.9E-12	324	373	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.09E-14	324	384	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.52E-10	324	372	No hit	No description
Gene3D	G3DSA:4.10.280.10	6.5E-11	327	379	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.4E-4	328	367	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 420 aa Download sequence Send to blast
MDSSSWNNLT TTRQDIASIP SCLWSNLQYD AFSESNENYS NKDQAFFTSG LELQGIQASE 60 MSSNLDGGEM VEMLAPALDS INNNLDLEFL QCQQVTRLVA DSVLEKSRVG ATWGDALPSS 120 QLCSLPPIIS SKAVDPFDSL TETIGSSAEL RLLSDLTNDE SGISAIFSSS ELNIHNLGYS 180 GNISSGESEN HGSFDHHRGE VASVSQTSSN PHHAQPGFSN PDQTHAEQAK GKPITKRELE 240 EAGIEISFGD GPRPKKSRSE KKHLGSSSIN FGHESGYEPD TEAIAQVKEM IYRAAALRPV 300 NLEVEEAVEK PKRKNVRISS DPQTVAARLR RERISERLRV LQSLVPGGSK MDTASMLDEA 360 ANYLKFLKSQ VKVLETQVVA HRTAHGQRHS LRAEGTVPLI RAKRALEKAT NHIGYHMVEI

Sequence ? help Back to Top

Protein Sequence Length: 420 aa Download sequence Send to blast

MDSSSWNNLT TTRQDIASIP SCLWSNLQYD AFSESNENYS NKDQAFFTSG LELQGIQASE  60
MSSNLDGGEM VEMLAPALDS INNNLDLEFL QCQQVTRLVA DSVLEKSRVG ATWGDALPSS  120
QLCSLPPIIS SKAVDPFDSL TETIGSSAEL RLLSDLTNDE SGISAIFSSS ELNIHNLGYS  180
GNISSGESEN HGSFDHHRGE VASVSQTSSN PHHAQPGFSN PDQTHAEQAK GKPITKRELE  240
EAGIEISFGD GPRPKKSRSE KKHLGSSSIN FGHESGYEPD TEAIAQVKEM IYRAAALRPV  300
NLEVEEAVEK PKRKNVRISS DPQTVAARLR RERISERLRV LQSLVPGGSK MDTASMLDEA  360
ANYLKFLKSQ VKVLETQVVA HRTAHGQRHS LRAEGTVPLI RAKRALEKAT NHIGYHMVEI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	327	332	RLRRER

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008806843.1	0.0	transcription factor bHLH87-like isoform X1
Swissprot	Q8S3D2	5e-52	BH087_ARATH; Transcription factor bHLH87
TrEMBL	A0A2H3Z1I4	0.0	A0A2H3Z1I4_PHODC; transcription factor bHLH87-like isoform X1
STRING	XP_008806843.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1546	37	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	8e-46	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]