PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s703731g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family Trihelix
Protein Properties Length: 465aa    MW: 52920.5 Da    PI: 9.9072
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s703731g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix83.82.3e-2696175182
           trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 
                        rWt+qe+l L+++r+em+  +++  lk+plWe vs+k++e g++rs+k+Ckek+en++k++k+ keg+ +r+ ++s  + + 
  PDK_30s703731g001  96 RWTQQETLGLLKIRSEMDAGFQDVTLKGPLWEVVSRKLSELGYNRSAKKCKEKFENIQKYHKRAKEGRAGRQHGKS--YCFS 175
                        8********************************************************************9976665..4455 PP
2trihelix61.51.9e-19394452160
           trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkr 60 
                        rW+k ev+aLi++r+++e  +++g lk+plWe+++  mr+ g++rs+k+Ckekwen+n++
  PDK_30s703731g001 394 RWPKMEVHALIKLRTNLEPFYQEG-LKGPLWEQIAMGMRRLGYNRSAKKCKEKWENINND 452
                        8********************999.********************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.16689153IPR017877Myb-like domain
SMARTSM007170.01293155IPR001005SANT/Myb domain
CDDcd122031.37E-2395160No hitNo description
PfamPF138371.3E-1795174No hitNo description
Gene3DG3DSA:1.10.10.605.0E-495154IPR009057Homeodomain-like
PROSITE profilePS500907.294387450IPR017877Myb-like domain
SMARTSM007170.76391452IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.4E-4391449IPR009057Homeodomain-like
CDDcd122036.22E-20393452No hitNo description
PfamPF138373.8E-13393451No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010192Biological Processmucilage biosynthetic process
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
AKRMDVVWGE TAGVEGQLWL LCPILFILQL VGIPLRWGVS PIRWSFVHGT NLKGGKKVTT  60
KNFEESDSTV AKIFPNKERA LLLREESKKD PEIESRWTQQ ETLGLLKIRS EMDAGFQDVT  120
LKGPLWEVVS RKLSELGYNR SAKKCKEKFE NIQKYHKRAK EGRAGRQHGK SYCFSGQLEA  180
LHDITATSTT STIDPVVAPT DINTVSNPAT AIANTSLSLS NTTFSSGSDD SKVEGASRKG  240
QKRKREKGSK TSKTMMTFFE ELMRQVVERQ DAMEQQFLEA LENRERDRMV REQAWRRQEM  300
VRLTREKELM AQERASIASR EQAIITFLRK ISGQEVPIPP LSTTTTTTTT PQPSSPQQQQ  360
QKQSSNDTEL IIIPIAGHQE MLTGNTTMEL MSSRWPKMEV HALIKLRTNL EPFYQEGLKG  420
PLWEQIAMGM RRLGYNRSAK KCKEKWENIN NDTVCDLQEV QLISI
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00243DAPTransfer from AT1G76880Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008810371.10.0trihelix transcription factor GTL1-like isoform X1
RefseqXP_008810373.10.0trihelix transcription factor GTL1-like isoform X2
TrEMBLA0A2H3Z9560.0A0A2H3Z956_PHODC; trihelix transcription factor GTL1-like isoform X2
TrEMBLA0A2H3Z9B40.0A0A2H3Z9B4_PHODC; trihelix transcription factor GTL1-like isoform X1
STRINGXP_008810371.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.18e-50Trihelix family protein