PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s704581g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family bHLH
Protein Properties Length: 200aa    MW: 22437.8 Da    PI: 5.0858
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s704581g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.93.3e-123880855
                       HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                        E++RR+++++++  Lr+++P+      +K++Ka+i + A++YI++Lq
  PDK_30s704581g001 38 TEKNRREKLKEKLYALRSVVPNI-----TKMDKASIIKDAINYIQQLQ 80
                       5*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.3963079IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.19E-183698IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.8E-153685IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-173796IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-93880IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.16E-133984No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MGVFNTSSWI TGEASSQCYF SSSSIVATSP TPPKYLVTEK NRREKLKEKL YALRSVVPNI  60
TKMDKASIIK DAINYIQQLQ EQEKMLQSEI SELEMSHELA DIFYDMEQDD VLQTSPSRPL  120
DPGSPFIPSI EVLELKVLAV GNKNFVISFT CNKKRDALIK MCEVFESLNL KIITANIISS  180
SESLSHTLFI EISISHGLVP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-1432106678Transcription factor MYC2
5gnj_B4e-1432106678Transcription factor MYC2
5gnj_E4e-1432106678Transcription factor MYC2
5gnj_F4e-1432106678Transcription factor MYC2
5gnj_G4e-1432106678Transcription factor MYC2
5gnj_I4e-1432106678Transcription factor MYC2
5gnj_M4e-1432106678Transcription factor MYC2
5gnj_N4e-1432106678Transcription factor MYC2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026658142.11e-130transcription factor bHLH35-like isoform X1
SwissprotQ2HIV95e-52BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A3Q0HXI31e-129A0A3Q0HXI3_PHODC; transcription factor bHLH35-like isoform X1
STRINGXP_008781924.11e-127(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104438133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.34e-48bHLH family protein