PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s704701g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB
Protein Properties Length: 319aa    MW: 36170.4 Da    PI: 6.0981
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s704701g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.11.3e-151461148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g W++eEde+l++ +  +G g+W+++++  g+ R++k+c++rw +yl
  PDK_30s704701g002 14 KGLWSPEEDEKLYNHIMSYGVGCWSSVPKLAGLQRCGKSCRLRWINYL 61
                       678*******************************************97 PP
2Myb_DNA-binding53.36.2e-1767111147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        rg+++++E++l+v++++ lG++ W+ Ia+ ++ gRt++++k++w++ 
  PDK_30s704701g002  67 RGSFSQQEEDLIVCLHEILGNR-WSQIASQLP-GRTDNEIKNYWNSC 111
                        899*******************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-25664IPR009057Homeodomain-like
PROSITE profilePS5129417.26961IPR017930Myb domain
SuperFamilySSF466898.61E-2912108IPR009057Homeodomain-like
SMARTSM007172.6E-121363IPR001005SANT/Myb domain
PfamPF002492.9E-141461IPR001005SANT/Myb domain
CDDcd001675.94E-111761No hitNo description
PROSITE profilePS5129425.94962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-2565116IPR009057Homeodomain-like
SMARTSM007173.8E-1666114IPR001005SANT/Myb domain
PfamPF002492.2E-1567111IPR001005SANT/Myb domain
CDDcd001675.33E-1169109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MGRHSCCLKQ KLRKGLWSPE EDEKLYNHIM SYGVGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGSF SQQEEDLIVC LHEILGNRWS QIASQLPGRT DNEIKNYWNS CLKKKLRQRG  120
IDPSTHKPLS EIEAPVEEPG LNNSSSRSSI EHLPVKPAFD PFPLIDIQAG VDPMETNSNL  180
CSQIQQTFKP FNQNELLTSS GFCDYSSLLD VSENYGCGES SSNSSNWNCN IGTDTTYVLG  240
NEVLNWVSNN KVDSLTQMHN NGVETFEPKI SPWHQKQNHV QSTQDYNGYP IRSLSRDLSE  300
ACLDIPRGEL ASEFNVDFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-29311616128MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111117LKKKLRQ
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008791156.10.0myb-related protein Hv33-like
SwissprotP200271e-83MYB3_HORVU; Myb-related protein Hv33
TrEMBLA0A2H3XZT40.0A0A2H3XZT4_PHODC; myb-related protein Hv33-like
STRINGXP_008791156.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23273391
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09540.15e-81myb domain protein 61