PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s705791g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

WRKY

Protein Properties

Length: 175aa MW: 19957.5 Da PI: 8.5729

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s705791g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98.3	5.1e-31	97	155	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYG+K+vk++++pr+YYrC+s+gC+vkkkver++ed ++v +tYeg Hnh+ PDK_30s705791g001 97 LDDGYKWRKYGKKTVKNNPNPRNYYRCSSKGCMVKKKVEREREDSSYVLTTYEGLHNHD 155 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	6.3E-33	84	157	IPR003657	WRKY domain
SuperFamily	SSF118290	8.89E-29	90	157	IPR003657	WRKY domain
PROSITE profile	PS50811	32.064	92	157	IPR003657	WRKY domain
SMART	SM00774	1.3E-35	97	156	IPR003657	WRKY domain
Pfam	PF03106	2.0E-24	98	155	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence Send to blast
MSSYCSLLSS NSSENDWPHD MLFEISNHPA FNEELQGAYS MPPPACQQNP FLLQANGTHV 60 KQTDAGDCTK NKNALKTALR ESSTKIAFKT KLEVEMLDDG YKWRKYGKKT VKNNPNPRNY 120 YRCSSKGCMV KKKVERERED SSYVLTTYEG LHNHDAPSPA ISCHLDFKHR THLIP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	4e-27	82	158	2	78	Probable WRKY transcription factor 4
2lex_A	4e-27	82	158	2	78	Probable WRKY transcription factor 4
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_026656313.1	3e-69	probable WRKY transcription factor 75 isoform X1
TrEMBL	A0A3Q0HNJ9	7e-68	A0A3Q0HNJ9_PHODC; probable WRKY transcription factor 75 isoform X1
STRING	XP_008810059.1	6e-84	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP441	37	206

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64810.1	2e-38	WRKY DNA-binding protein 51