PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s705951g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family GRAS
Protein Properties Length: 260aa    MW: 29058 Da    PI: 4.8871
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s705951g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS233.11.2e-711022381297
               GRAS  81 lklfsevsPilkfshltaNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLak 167
                        l l +e++P+l+f+h++aN  Ilea+ege+ vH++D++++    +G QW  L+++La+R+++pp ++RiTgvg+       +l+++g+ L+ 
  PDK_30s705951g002  10 LGLAYELCPFLRFGHFVANASILEAFEGENLVHVVDLGMTlglpHGHQWRKLIDSLADRTAPPPrRIRITGVGA----PGARLKAIGDELET 97 
                        55679*******************************98873333788*************999989********....99************ PP

               GRAS 168 fAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfle 259
                        +A++lg+++ef + v+++le+l++e+L++++gEal+Vn++lqlh +++es    +   +vL+++ +lsP+++v+veq+a+hn++ Fl rf+e
  PDK_30s705951g002  98 YARKLGINLEFFA-VERNLENLTPEDLELDEGEALVVNSMLQLHCVVKESRGALN---SVLQMIHELSPRMLVLVEQDASHNGPFFLGRFME 185
                        *************.79*******************************88877777...8********************************* PP

               GRAS 260 aleyysalfdsleaklpreseerikvErellgreivnv 297
                        al+yysa+fdsl+a lpr + +r+kvE++++++ei+n+
  PDK_30s705951g002 186 ALHYYSAIFDSLDAMLPRYDTKRAKVEQFYFAEEIKNI 223
                        ************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.8891260IPR005202Transcription factor GRAS
PfamPF035144.2E-6910223IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MAADRKEEAL GLAYELCPFL RFGHFVANAS ILEAFEGENL VHVVDLGMTL GLPHGHQWRK  60
LIDSLADRTA PPPRRIRITG VGAPGARLKA IGDELETYAR KLGINLEFFA VERNLENLTP  120
EDLELDEGEA LVVNSMLQLH CVVKESRGAL NSVLQMIHEL SPRMLVLVEQ DASHNGPFFL  180
GRFMEALHYY SAIFDSLDAM LPRYDTKRAK VEQFYFAEEI KNIEGAKELG SSHHGSNGPE  240
DYGNITEFVK KGPEESESSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-401724987321GRAS family transcription factor containing protein, expressed
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008799986.11e-159scarecrow-like protein 21
TrEMBLA0A2H3YKS81e-158A0A2H3YKS8_PHODC; scarecrow-like protein 21
STRINGXP_008799986.11e-159(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56403354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.19e-40RGA-like 1