PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s707661g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family ZF-HD
Protein Properties Length: 193aa    MW: 20985.3 Da    PI: 7.4452
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s707661g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer72.85.2e-23859458
        ZF-HD_dimer  4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58
                        +Y+eC++NhAa lG++  DGC+E++++     +++ + CaACgCHRnFHR+ + 
  PDK_30s707661g001  8 EVYRECMRNHAALLGAYDSDGCCEYTSD---ALHPNVMFCAACGCHRNFHRKGPM 59
                       57************************98...5679****************9775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047704.8E-19956IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257746.0E-151056IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015666.3E-171056IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152319.8271057IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.604.1E-2375143IPR009057Homeodomain-like
SuperFamilySSF466896.27E-1375143IPR009057Homeodomain-like
TIGRFAMsTIGR015654.1E-2783143IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MEPERLSEVY RECMRNHAAL LGAYDSDGCC EYTSDALHPN VMFCAACGCH RNFHRKGPMN  60
NSATTGGINI RVGTAGEIHR ARRRRRRTKF TAEQKARMAA FAAQIGWKVR KQDRCGGQDE  120
VSRFCEDIGI TRQVFKIWIH NHKGGAAAAT TSAGNTSTAA GADWEGEGDG GSKGGGGEVE  180
EEIEGSASME EEK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A2e-17831491779ZF-HD homeobox family protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18186RRRRRR
28287RRRRRT
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
UniProtPutative transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008787971.11e-141zinc-finger homeodomain protein 11-like
SwissprotA2XLF42e-48ZHD11_ORYSI; Zinc-finger homeodomain protein 11
SwissprotQ10DV52e-48ZHD11_ORYSJ; Zinc-finger homeodomain protein 11
TrEMBLA0A2H3XS371e-140A0A2H3XS37_PHODC; zinc-finger homeodomain protein 11-like
STRINGXP_008787971.11e-141(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92043243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.11e-28homeobox protein 22