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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
PDK_30s707661g003 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 277aa MW: 30576 Da PI: 10.0975 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PDK_30s707661g003 | genome | PDK | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 324.3 | 3.6e-99 | 1 | 277 | 1 | 301 |
GAGA_bind 1 mdddgsre.rnkgyyepaaslkenlglqlmssiaerdakirernlalsekkaavaerd..maflqrdkalaernkalverdnkllalllven 89
mddd rn+gyy++ lk nlglqlmss++erd+k+ +n + +++ vae m+f rd ++++ +rdnk+l++l++++
PDK_30s707661g003 1 MDDDEGLGiRNWGYYDQP--LKGNLGLQLMSSVPERDTKPLLSNGGFLHRDCGVAEPSipMDF-VRDGWIHH------NRDNKILHVLPMNH 83
788777777********9..********************99999999999999887677***.9******9......9**********888 PP
GAGA_bind 90 slasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkke 181
+++++l++ +++lq l+++ + r+ ++ + + + ++++ kkr++++ k++k kk+kk ++ ++++++
PDK_30s707661g003 84 H-----QHNYGMLPDPPGAHTLQI-----LQPPEPP-RD----DKVLMM-EDPGGRNETPLKKRSQGRPHKSPKPKKPKKVA-AP-RDEATN 157
5.....46799*******999998.....5555555.22....223333.3445555566667899999999******9944.45.455555 PP
GAGA_bind 182 saderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLa 273
++ +r ka kks++lv+ng++lD+s++P+P+CsCtG+++qCY+WG GGWqSaCCtt+iS yPLP+stkrrgaRiagrKmSqgafkk+LekLa
PDK_30s707661g003 158 GSVSRGKAGKKSTGLVINGIDLDISGIPTPICSCTGTPQQCYRWGVGGWQSACCTTSISCYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLA 249
55589*************************************************************************************** PP
GAGA_bind 274 aeGydlsnpvDLkdhWAkHGtnkfvtir 301
+eG++lsnp+DL+++WAkHGtnkfvtir
PDK_30s707661g003 250 GEGHNLSNPIDLRTFWAKHGTNKFVTIR 277
***************************8 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0050793 | Biological Process | regulation of developmental process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 277 aa
Download sequence Send
to blast |
MDDDEGLGIR NWGYYDQPLK GNLGLQLMSS VPERDTKPLL SNGGFLHRDC GVAEPSIPMD 60
FVRDGWIHHN RDNKILHVLP MNHHQHNYGM LPDPPGAHTL QILQPPEPPR DDKVLMMEDP 120
GGRNETPLKK RSQGRPHKSP KPKKPKKVAA PRDEATNGSV SRGKAGKKST GLVINGIDLD 180
ISGIPTPICS CTGTPQQCYR WGVGGWQSAC CTTSISCYPL PMSTKRRGAR IAGRKMSQGA 240
FKKVLEKLAG EGHNLSNPID LRTFWAKHGT NKFVTIR
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Positively regulates the homeotic gene BKN3. {ECO:0000269|PubMed:12795701}. |
