PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s710201g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

bHLH

Protein Properties

Length: 308aa MW: 33857.2 Da PI: 10.2104

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s710201g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.5	1.3e-09	248	287	4	43
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaei 43 h + ErrRR+++N +f+eLr llP+ sk+++ sK+++ PDK_30s710201g001 248 HHVISERRRREKLNGSFQELRILLPPGSKEDGDGSSKSQT 287 58899*********************65676666888776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.05E-7	237	275	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.78E-6	243	273	No hit	No description
PROSITE profile	PS50888	9.782	244	300	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-7	245	280	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.7E-7	249	287	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
LARLRAGFAR GRRFGSMNSV AAQVQQPFYQ DSTWMDYSTM YQAAALMGWK NGEIELGLST 60 LSNQPQLEEF FPCERSWPSS SSSLPSFSGG SPEYSSLLNN MVYGSFIPDP SKELIAKVAA 120 QPSPAVFPPP QAAMQACSQR RSARFPILGD DDEAAITRAM MAVISSSSSS SYSSSPPLIS 180 RTPQEAQNHQ LGAFKPYNLA LAPKLEPKNG SCGQKMIKKS ISISKRINWS SAEARSKEPR 240 AASSNQLHHV ISERRRREKL NGSFQELRIL LPPGSKEDGD GSSKSQTSTF QGWLNAPKQP 300 LKTLKFYH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	252	257	ERRRRE
2	253	258	RRRREK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008797775.1	1e-171	putative transcription factor bHLH041 isoform X3
TrEMBL	A0A2H3YEX1	1e-170	A0A2H3YEX1_PHODC; putative transcription factor bHLH041 isoform X3
STRING	XP_008797772.1	1e-170	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3977	33	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56960.1	2e-07	bHLH family protein