PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s710211g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

NAC

Protein Properties

Length: 242aa MW: 27305.9 Da PI: 9.7041

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s710211g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	152.7	1.7e-47	14	139	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtdeelvv+yL++k+ + +l++ vi+e+d+ k++PwdLp ++e e yfFs r+ ky tgkr+nrat sgyWkatgk+++v PDK_30s710211g001 14 LPPGFRFHPTDEELVVQYLRRKAFSWPLPA-AVIPEIDLGKYDPWDLPG--GGKEGEQYFFSLREAKYLTGKRHNRATISGYWKATGKNTPV 102 79*************************9.89***********3..3456699****************************99 PP NAM 93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ ++lvglkk+Lvfy+g+ p+g++tdW+mhey l PDK_30s710211g001 103 IASrCNQLVGLKKVLVFYRGKPPHGSRTDWIMHEYCL 139 98768889*************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.18E-53	9	174	IPR003441	NAC domain
PROSITE profile	PS51005	53.607	14	174	IPR003441	NAC domain
Pfam	PF02365	2.1E-24	15	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence Send to blast
MEKPDFMKYG VTRLPPGFRF HPTDEELVVQ YLRRKAFSWP LPAAVIPEID LGKYDPWDLP 60 GGGKEGEQYF FSLREAKYLT GKRHNRATIS GYWKATGKNT PVIASRCNQL VGLKKVLVFY 120 RGKPPHGSRT DWIMHEYCLA APETTTFSFP QRKISAHSSM VPSKHWVVCR IFKKRRASRI 180 DAETTPYYNY SRIRNNNVEL IDPGPSLSSS SSSSSCVTNL SVDGEEGCSS NDSASSPNGR 240 EM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-45	14	179	17	170	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-45	14	179	17	170	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-45	14	179	17	170	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-45	14	179	17	170	NO APICAL MERISTEM PROTEIN
3swm_A	1e-45	14	179	20	173	NAC domain-containing protein 19
3swm_B	1e-45	14	179	20	173	NAC domain-containing protein 19
3swm_C	1e-45	14	179	20	173	NAC domain-containing protein 19
3swm_D	1e-45	14	179	20	173	NAC domain-containing protein 19
3swp_A	1e-45	14	179	20	173	NAC domain-containing protein 19
3swp_B	1e-45	14	179	20	173	NAC domain-containing protein 19
3swp_C	1e-45	14	179	20	173	NAC domain-containing protein 19
3swp_D	1e-45	14	179	20	173	NAC domain-containing protein 19
4dul_A	2e-45	14	179	17	170	NAC domain-containing protein 19
4dul_B	2e-45	14	179	17	170	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269\|PubMed:20388856, ECO:0000269\|PubMed:21673078, ECO:0000269\|PubMed:24442717}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269\|PubMed:21673078}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008813225.1	0.0	NAC domain-containing protein 83-like
Swissprot	Q9FY93	8e-71	NAC83_ARATH; NAC domain-containing protein 83
TrEMBL	A0A2H3ZFX5	0.0	A0A2H3ZFX5_PHODC; NAC domain-containing protein 83-like
STRING	XP_008813225.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6317	32	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13180.1	1e-72	NAC domain containing protein 83

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]