PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s710711g004
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family G2-like
Protein Properties Length: 241aa    MW: 25742.7 Da    PI: 5.42
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s710711g004genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like39.71.1e-121411663156
            G2-like  31 tilelmkvkgLtlehvkSHLQkYRla 56 
                        +i+elmkv+gLt+++vkSHLQkYRl+
  PDK_30s710711g004 141 AIRELMKVDGLTNDEVKSHLQKYRLH 166
                        699*********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.33E-5133169IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.7E-12139169IPR009057Homeodomain-like
TIGRFAMsTIGR015576.6E-10141166IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MGSAAPELGL DLKLYAMKSV SSFLREEASA IQNGEGRMLW SDNYSDENKN NATDDEKRIA  60
EKRGGEADCE TSSLESRGRS GGGAFVPFKG LSALAENPMK EDKLAVALPD LSLLSPGITA  120
SRPVPAVTED HRGGGLISKV AIRELMKVDG LTNDEVKSHL QKYRLHTRRV PNASAATNSP  180
VVMMGGLWAP QEHYSTSKQS ASQSGSPQSP LQLAGAARTI SITAGDSCEE EDGKSESYSW  240
K
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008792589.11e-127myb family transcription factor EFM
TrEMBLA0A2H3Y2T91e-126A0A2H3Y2T9_PHODC; myb family transcription factor EFM
STRINGXP_008792589.11e-127(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55823353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13300.16e-19G2-like family protein