PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s710961g004

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

NAC

Protein Properties

Length: 174aa MW: 19845.8 Da PI: 8.8163

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s710961g004	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	173.7	5.3e-54	9	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lp GfrFhPtdeelv++yLk+k++g+ +++evi+e+d++k+ePwdLp k +++++ ew+fF+++d+kya+g+r+nrat++gyWkatgkd+ PDK_30s710961g004 9 LPLGFRFHPTDEELVNHYLKRKISGRIKSEAEVIPEIDVCKCEPWDLPdKsIIRSDDPEWFFFAPKDRKYANGHRSNRATEAGYWKATGKDR 100 699**********************99999***********96446667778****************************** PP NAM 91 evlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128 + sk +++++g+kktLvf++grapkg +t+W+mheyr PDK_30s710961g004 101 VIRSKaaaaGHNVIGMKKTLVFHQGRAPKGIRTSWIMHEYRT 142 988888888*************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.75E-57	4	147	IPR003441	NAC domain
PROSITE profile	PS51005	54.741	9	158	IPR003441	NAC domain
Pfam	PF02365	8.8E-29	10	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 174 aa Download sequence Send to blast
MTAIALQLLP LGFRFHPTDE ELVNHYLKRK ISGRIKSEAE VIPEIDVCKC EPWDLPDKSI 60 IRSDDPEWFF FAPKDRKYAN GHRSNRATEA GYWKATGKDR VIRSKAAAAG HNVIGMKKTL 120 VFHQGRAPKG IRTSWIMHEY RTTEPEFESG VQDYIFEVIP ICVGTDSMVL IRAA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-45	9	150	17	150	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-45	9	150	17	150	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-45	9	150	17	150	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-45	9	150	17	150	NO APICAL MERISTEM PROTEIN
3swm_A	3e-45	9	150	20	153	NAC domain-containing protein 19
3swm_B	3e-45	9	150	20	153	NAC domain-containing protein 19
3swm_C	3e-45	9	150	20	153	NAC domain-containing protein 19
3swm_D	3e-45	9	150	20	153	NAC domain-containing protein 19
3swp_A	3e-45	9	150	20	153	NAC domain-containing protein 19
3swp_B	3e-45	9	150	20	153	NAC domain-containing protein 19
3swp_C	3e-45	9	150	20	153	NAC domain-containing protein 19
3swp_D	3e-45	9	150	20	153	NAC domain-containing protein 19
4dul_A	3e-45	9	150	17	150	NAC domain-containing protein 19
4dul_B	3e-45	9	150	17	150	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (PubMed:18443413, PubMed:24329768). Calmodulin-regulated transcriptional repressor. Binds several synthetic promoters with randomly selected binding sites (PubMed:17947243). Functions synergistically with SNI1 as negative regulator of pathogen-induced PR1 expression and basal resistance to a virulent strain of P.syringae. Binds directly to the promoter of the PR1 gene (PubMed:22826500). Acts as positive regulator of innate immunity. Involved in the effector-triggered immunity (ETI) induction of immunity-related gene expression (PubMed:24329768). Mediates osmotic stress signaling in leaf senescence by up-regulating senescence-associated genes (PubMed:18443413). {ECO:0000269\|PubMed:17947243, ECO:0000269\|PubMed:18443413, ECO:0000269\|PubMed:22826500, ECO:0000269\|PubMed:24329768}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017702021.1	1e-108	protein NTM1-like 9
Swissprot	F4JN35	3e-68	NTL9_ARATH; Protein NTM1-like 9
TrEMBL	A0A2H4A0S1	1e-106	A0A2H4A0S1_PHODC; protein NTM1-like 9
STRING	XP_008811393.1	1e-111	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5172	38	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35580.1	1e-70	NAC transcription factor-like 9

Publications ? help Back to Top
Zheng XY, et al. Spatial and temporal regulation of biosynthesis of the plant immune signal salicylic acid. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(30): p. 9166-73 [PMID:26139525] Guo T, et al. Lamin-like Proteins Negatively Regulate Plant Immunity through NAC WITH TRANSMEMBRANE MOTIF1-LIKE9 and NONEXPRESSOR OF PR GENES1 in Arabidopsis thaliana. Mol Plant, 2017. 10(10): p. 1334-1348 [PMID:28943325]