PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s711191g004
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family TALE
Protein Properties Length: 153aa    MW: 17649 Da    PI: 7.7168
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s711191g004genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox31.72.6e-10881202355
                        SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
           Homeobox  23 rypsaeereeLAkklgLterqVkvWFqNrRake 55 
                        +yp++ee+++LA+ +gL+ +q+ +WF N+R ++
  PDK_30s711191g004  88 PYPTEEEKAKLAEMTGLDPKQINNWFINQRKRH 120
                        8*****************************985 PP
2ELK36.51.1e-124061122
                ELK  1 ELKhqLlrKYsgyLgsLkqEFs 22
                       ELK++Ll+KYsgyL++L++EF+
  PDK_30s711191g004 40 ELKEMLLKKYSGYLSNLRKEFL 61
                       9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF037893.9E-104061IPR005539ELK domain
PROSITE profilePS5121311.2614060IPR005539ELK domain
SMARTSM011881.9E-64061IPR005539ELK domain
PROSITE profilePS5007112.98960123IPR001356Homeobox domain
SMARTSM003894.9E-1562127IPR001356Homeobox domain
SuperFamilySSF466896.42E-2162132IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.4E-2865126IPR009057Homeodomain-like
CDDcd000861.57E-1372124No hitNo description
PfamPF059208.8E-1880119IPR008422Homeobox KN domain
PROSITE patternPS00027098121IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MQKHSLLSDE VAGSSEEELS CGDVDASESL ESGSRLADHE LKEMLLKKYS GYLSNLRKEF  60
LKKRKKGKLP KDARLTLLDW WHTHYRWPYP TEEEKAKLAE MTGLDPKQIN NWFINQRKRH  120
WKPSEDMQFA LMEGVSGGSN GTMLYFDRGT VGP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15564LRKEFLKKRK
26165KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693}.
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693, ECO:0000269|PubMed:10488233}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU9371151e-179GU937115.1 Cocos nucifera KNOTTED-like homebox protein 2 (KNOX2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010921494.19e-90homeobox protein knotted-1-like 1
SwissprotA2Y0073e-70KNOSA_ORYSI; Homeobox protein knotted-1-like 10
SwissprotQ7GDL53e-70KNOSA_ORYSJ; Homeobox protein knotted-1-like 10
TrEMBLF2YNF27e-88F2YNF2_ELAGV; Knotted-like homebox protein
STRINGXP_008781110.15e-88(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16983892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.15e-39KNOTTED-like from Arabidopsis thaliana
Publications ? help Back to Top
  1. Ito Y,Eiguchi M,Kurata N
    KNOX homeobox genes are sufficient in maintaining cultured cells in an undifferentiated state in rice.
    Genesis, 2001. 30(4): p. 231-8
    [PMID:11536429]
  2. Postma-Haarsma AD, et al.
    Developmental regulation and downstream effects of the knox class homeobox genes Oskn2 and Oskn3 from rice.
    Plant Mol. Biol., 2002. 48(4): p. 423-41
    [PMID:11908517]
  3. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  4. Kuijt SJ, et al.
    Different subcellular localization and trafficking properties of KNOX class 1 homeodomain proteins from rice.
    Plant Mol. Biol., 2004. 55(6): p. 781-96
    [PMID:15604716]
  5. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  6. Chu H, et al.
    A CLE-WOX signalling module regulates root meristem maintenance and vascular tissue development in rice.
    J. Exp. Bot., 2013. 64(17): p. 5359-69
    [PMID:24043854]
  7. Kuijt SJ, et al.
    Interaction between the GROWTH-REGULATING FACTOR and KNOTTED1-LIKE HOMEOBOX families of transcription factors.
    Plant Physiol., 2014. 164(4): p. 1952-66
    [PMID:24532604]
  8. Coudert Y, et al.
    Identification of CROWN ROOTLESS1-regulated genes in rice reveals specific and conserved elements of postembryonic root formation.
    New Phytol., 2015. 206(1): p. 243-54
    [PMID:25442012]
  9. Xu Y, et al.
    OsARID3, an AT-rich Interaction Domain-containing protein, is required for shoot meristem development in rice.
    Plant J., 2015. 83(5): p. 806-17
    [PMID:26121094]
  10. Kir G, et al.
    RNA Interference Knockdown of BRASSINOSTEROID INSENSITIVE1 in Maize Reveals Novel Functions for Brassinosteroid Signaling in Controlling Plant Architecture.
    Plant Physiol., 2015. 169(1): p. 826-39
    [PMID:26162429]