PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s713601g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family WOX
Protein Properties Length: 167aa    MW: 18520.2 Da    PI: 4.5408
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s713601g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox37.15.4e-12655246
                       T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHH CS
           Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkv 46
                       ++R+++t+eql +Lee++++  r+p+a+++++++++l    +++ ++V++
  PDK_30s713601g001  6 STRWCPTPEQLMILEEMYRSgVRTPNAAQIQQITAHLsyygKIEGKNVFY 55
                       58*****************99**************************986 PP
2Wus_type_Homeobox87.31.7e-28555252
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfy 52
                       ++tRW+PtpeQ++iLee+y+sG+rtPn+++iq+ita+L+ yGkie+kNVfy
  PDK_30s713601g001  5 PSTRWCPTPEQLMILEEMYRSGVRTPNAAQIQQITAHLSYYGKIEGKNVFY 55
                       689***********************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF000461.2E-9655IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008283Biological Processcell proliferation
GO:0009908Biological Processflower development
GO:0009943Biological Processadaxial/abaxial axis specification
GO:0009947Biological Processcentrolateral axis specification
GO:0010865Biological Processstipule development
GO:0048513Biological Processanimal organ development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MPQTPSTRWC PTPEQLMILE EMYRSGVRTP NAAQIQQITA HLSYYGKIEG KNVFYCNYFA  60
VALTLLRAIT LTLACFHLLL LLGDEATTQG MDLVGKLETV GTEEEEEEPM TSAMGFEQEW  120
MTTMDASSRV PPCCRPLKTL DLFPVKSTGL KDECSSSKSS SCSTSTN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008776170.16e-75WUSCHEL-related homeobox 3B-like
TrEMBLA0A2H3WZS31e-73A0A2H3WZS3_PHODC; WUSCHEL-related homeobox 3B-like
STRINGXP_008776170.12e-74(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21773897
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.13e-29WOX family protein