PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s715151g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family bHLH
Protein Properties Length: 285aa    MW: 30466.7 Da    PI: 6.0506
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s715151g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.19e-10198241755
                        HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        ++ ++RR+ri +++  L++l+P+       K++ +++LekA+ Y+k Lq
  PDK_30s715151g001 198 IAAKNRRERISERLKILQDLVPNG-----SKVDLVTMLEKAITYVKFLQ 241
                        5679*******************5.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.31E-13191251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.097191240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-12192248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.88E-12193245No hitNo description
SMARTSM003531.8E-11197246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.7E-7199241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048766Biological Processroot hair initiation
GO:0005739Cellular Componentmitochondrion
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MALAKERTLE GSQTRSLYGK AHGGGPSLQG LDPSSLQVFS YKGHNSAVLE DGEGSESPGS  60
YSGDLVPMSS DPSNSSSGSF VFGPVDASLL EARSVVNFKA AADHWACSGS SVLSFEQGDT  120
ALCSDYQNID QEGPGKEQFG LLYRGLAADD GLQENAEQEN GIQKRPYTGG DSQASKKHCG  180
NTRKTKAKPG PSKDPQSIAA KNRRERISER LKILQDLVPN GSKVDLVTML EKAITYVKFL  240
QLQVKVLATD EFWPAQGGKA PDVSQVKDAI DAILSSHRNR NSSSE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017697927.20.0transcription factor bHLH76-like
TrEMBLA0A2H3ZNC80.0A0A2H3ZNC8_PHODC; transcription factor bHLH76-like
STRINGXP_008787978.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141238117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.13e-58ROOT HAIR DEFECTIVE6