PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s715151g005

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

NF-YB

Protein Properties

Length: 153aa MW: 17150.5 Da PI: 4.546

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s715151g005	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	74.6	1.5e-23	11	93	3	85
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv 85 ++d lP a + +i+k++lP + ++++da++++ ec +efi +v+se+++ c re+++ti+++ +l al lGf +yve++ + PDK_30s715151g005 11 KEDVSLPKATMFKIIKEMLPPDVRVARDAQDLLVECCVEFINLVSSESNEVCSREEKRTIAPEHVLKALEVLGFGEYVEEVYA 93 68999**************************************************************************9865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	7.2E-38	8	138	IPR009072	Histone-fold
SuperFamily	SSF47113	7.38E-34	12	139	IPR009072	Histone-fold
Pfam	PF00808	1.1E-20	15	79	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 153 aa Download sequence Send to blast
MEPMDIVGKS KEDVSLPKAT MFKIIKEMLP PDVRVARDAQ DLLVECCVEF INLVSSESNE 60 VCSREEKRTI APEHVLKALE VLGFGEYVEE VYAAYKQHKL DTLDSPKGGK SSLEMTEEEA 120 LAEQQRMFAE ARARMNNGMA LQKQSDSDHG LNS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_B	1e-35	12	132	12	133	Transcription Regulator NC2 beta chain
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008787932.1	1e-110	protein Dr1 homolog
Swissprot	P49592	1e-78	NC2B_ARATH; Protein Dr1 homolog
TrEMBL	A0A2H3XS56	1e-109	A0A2H3XS56_PHODC; protein Dr1 homolog
STRING	XP_008787932.1	1e-109	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5720	35	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23090.4	9e-83	nuclear factor Y, subunit B13

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]