PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s718424g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family C2H2
Protein Properties Length: 194aa    MW: 21226.8 Da    PI: 5.2577
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s718424g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.78.7e-056284123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       y+C+ C + F++   L  H+++H
  PDK_30s718424g002 62 YTCTFCRREFRSAQALGGHMNVH 84
                       9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.95E-65988No hitNo description
Gene3DG3DSA:3.30.160.608.9E-46087IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00666284IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.1576289IPR007087Zinc finger, C2H2
PfamPF139121.4E-56285IPR007087Zinc finger, C2H2
PROSITE patternPS0002806484IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MAAELSLLSL NQLQKLAQQQ QQFNPRNWPG LRLGEADDSW EVRAFAGETS GATGTTWPPR  60
SYTCTFCRRE FRSAQALGGH MNVHRRDRAR LRQSPQGSDP SPPTTPSPPI TFPPPVPEFV  120
ASGRYCLLYP IRDTGTIFAP TSDSPSTLLF ITPYPGTGLI SPCPPTLDSG VNKDGGKDGD  180
AVDEELDLEL RLGW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-135784229superman protein
2l1o_A2e-135784229Transcriptional regulator SUPERMAN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008796324.11e-139transcriptional regulator SUPERMAN-like
TrEMBLA0A2H3YBV81e-138A0A2H3YBV8_PHODC; transcriptional regulator SUPERMAN-like
STRINGXP_008796324.11e-138(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118522633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.13e-27C2H2 family protein