PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s718521g005

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

bHLH

Protein Properties

Length: 413aa MW: 45729.5 Da PI: 5.146

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s718521g005	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	21.8	3.4e-07	330	370	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri +++ L++l+P K++ a++L +A +Y+k L PDK_30s718521g005 330 ARHRRERISEKLRVLQRLVPGG-----SKMDTASMLDEAANYLKFL 370 599***************95.....5**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.761	321	370	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.71E-9	327	375	No hit	No description
SMART	SM00353	9.5E-13	327	376	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.71E-14	327	387	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.5E-11	329	379	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.4E-4	331	370	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence Send to blast
MDSLGWDNSA NIASEISSIP SCLWSNQYDN FSESNEEYSN TSDQAELDRA FYASGLKLQG 60 VQASEMSSFD RVDEMVEMLA PALDSRHEAI SLAAADSIPE KSGISSTWGD VLSSDQLRSS 120 LPPITSSEAV DPFDSLAENF SSSEELRVLG DIANDEEGIS TIFSSSENIR NLSCCGNTSS 180 GESENHGSFD HRRPNREEMA SVSQGSSKPD RTRSGISNPD QARDEQARRS KPISTKRKLE 240 ENHFTGFHIS FGNGRKPKKS RSEKHLGSSS GIYFDGESRY EPDTEAMAQV KEMIYRAAAL 300 RPVNFGVEEA VEKPKRKNVR ISSDPQTVAA RHRRERISEK LRVLQRLVPG GSKMDTASML 360 DEAANYLKFL KSQVKTLEAL GYRLDNMNSA ALPFPTPFNQ TYPMHALFTQ PKP

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence Send to blast

MDSLGWDNSA NIASEISSIP SCLWSNQYDN FSESNEEYSN TSDQAELDRA FYASGLKLQG  60
VQASEMSSFD RVDEMVEMLA PALDSRHEAI SLAAADSIPE KSGISSTWGD VLSSDQLRSS  120
LPPITSSEAV DPFDSLAENF SSSEELRVLG DIANDEEGIS TIFSSSENIR NLSCCGNTSS  180
GESENHGSFD HRRPNREEMA SVSQGSSKPD RTRSGISNPD QARDEQARRS KPISTKRKLE  240
ENHFTGFHIS FGNGRKPKKS RSEKHLGSSS GIYFDGESRY EPDTEAMAQV KEMIYRAAAL  300
RPVNFGVEEA VEKPKRKNVR ISSDPQTVAA RHRRERISEK LRVLQRLVPG GSKMDTASML  360
DEAANYLKFL KSQVKTLEAL GYRLDNMNSA ALPFPTPFNQ TYPMHALFTQ PKP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008797919.1	0.0	transcription factor bHLH87-like
Refseq	XP_026662690.1	0.0	transcription factor bHLH87-like
Swissprot	Q8S3D2	5e-59	BH087_ARATH; Transcription factor bHLH87
TrEMBL	A0A2H3YFC1	0.0	A0A2H3YFC1_PHODC; transcription factor bHLH87-like
STRING	XP_008797919.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1546	37	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	3e-61	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]