PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s719591g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family GRAS
Protein Properties Length: 449aa    MW: 49519.6 Da    PI: 5.8748
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s719591g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS290.64.3e-89594462373
               GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl..fsevsPil 91 
                        ++lL++cA+a++ +d++laq+l++ l+++a pdgd++qRl+a f+ AL ar ++++s  ++a +  +     ++++++a+ l  f++++P++
  PDK_30s719591g001  59 EQLLFHCANAIEVNDATLAQQLIWVLHNIAPPDGDSNQRLTAAFLHALIARASKTGSDAARADADLAL----HAHRFSAVDLvsFVDLTPWH 146
                        79****************************************************55555543333333....566667776678*******9 PP

               GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg......skeeleetgerLakfAeelgvpfe 177
                        +f   +aN aI eaveg   +Hi+D++ ++++Q p+L++ LasRpegpp lR+T  +++++          ++ e+g +L +fA++ +v +e
  PDK_30s719591g001 147 RF---AANAAITEAVEGFPVIHIVDLSTTHCMQIPTLIDLLASRPEGPPILRLTIPSPATTIttpppiLDLSYDELGAKLVHFARSRNVAME 235
                        97...6***********************************************98777666588888788999******************* PP

               GRAS 178 fnvlvakrledle..leeLrvkp.....gEalaVnlvlqlhrll..........desvsleserdevLklvkslsPkvvvvveqeadhnses 252
                        f+v+ ++ +++++  +e+Lrv++      Eal+Vn++++lh+++           + +s++s r+++Lk+++sl+P +v++v+++ad ++++
  PDK_30s719591g001 236 FRVIPSNPCDAFDtlIEQLRVQQlvsdgSEALIVNCQMMLHYIPdetagaisytMSMTSSTSLRSAFLKVLRSLQPALVTLVDEDADFTASD 327
                        ***9444444332115666666666666****************777777766633344444788*************************** PP

               GRAS 253 FlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkv 344
                         + r+ +a++y +  +d++++ lp+ese+r+++E+  ++++i+nv+a+eg +r+er e +++W +r+++aGF+ v +se+a+ ++k +l+++
  PDK_30s719591g001 328 VVGRLRSAFNYLWIPYDAVDTFLPKESEQRRWYEAG-VRWKIENVIAHEGMQRVERLEPKGRWAQRMRAAGFRGVGFSEDAVGEVKGMLEEH 418
                        ************************************.9****************************************************** PP

               GRAS 345 ksdgyrveeesgslvlgWkdrpLvsvSaW 373
                        +  g+ ++ e++ +vl+Wk++++v+++aW
  PDK_30s719591g001 419 S-AGWGLKREEEDFVLTWKGHNVVFATAW 446
                        9.8999*********************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.02232428IPR005202Transcription factor GRAS
PfamPF035141.5E-8659446IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MQFGESAPPP SPPLINLNGQ GLRLDLTAPK APLHRPRPWT GFPISAKSLG SFNTGSCMEQ  60
LLFHCANAIE VNDATLAQQL IWVLHNIAPP DGDSNQRLTA AFLHALIARA SKTGSDAARA  120
DADLALHAHR FSAVDLVSFV DLTPWHRFAA NAAITEAVEG FPVIHIVDLS TTHCMQIPTL  180
IDLLASRPEG PPILRLTIPS PATTITTPPP ILDLSYDELG AKLVHFARSR NVAMEFRVIP  240
SNPCDAFDTL IEQLRVQQLV SDGSEALIVN CQMMLHYIPD ETAGAISYTM SMTSSTSLRS  300
AFLKVLRSLQ PALVTLVDED ADFTASDVVG RLRSAFNYLW IPYDAVDTFL PKESEQRRWY  360
EAGVRWKIEN VIAHEGMQRV ERLEPKGRWA QRMRAAGFRG VGFSEDAVGE VKGMLEEHSA  420
GWGLKREEED FVLTWKGHNV VFATAWVPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B3e-465944988475Protein SHORT-ROOT
5b3h_B1e-465944934421Protein SHORT-ROOT
5b3h_E1e-465944934421Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017697793.10.0scarecrow-like protein 32
SwissprotQ9SN221e-158SCL32_ARATH; Scarecrow-like protein 32
TrEMBLA0A2H3ZNQ80.0A0A2H3ZNQ8_PHODC; scarecrow-like protein 32
STRINGXP_008787220.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56973759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-152GRAS family protein