PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s720261g005

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

HD-ZIP

Protein Properties

Length: 210aa MW: 24505.4 Da PI: 4.6762

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s720261g005	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.7	1.1e-19	30	83	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++f++eq++ Le+ Fe++ ++ +++ +LAk+lgL+ rqV +WFqN+Ra++k PDK_30s720261g005 30 KKRRFSEEQVKSLESIFESQAKLEPRKKLQLAKELGLQPRQVAIWFQNKRARWK 83 5679*************************************************9 PP
2	HD-ZIP_I/II	122	2.9e-39	30	119	2	91
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 kkrr+s+eqvk+LE+ Fe++ kLep++K +la+eLglqprqva+WFqn+RAR+k+kqlE++yeaLk++yd+l ++ e+L+ke++ L ++ PDK_30s720261g005 30 KKRRFSEEQVKSLESIFESQAKLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLEREYEALKANYDTLLSSVESLKKEKQILVKQS 119 9***********************************************************************************998775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.33E-19	13	87	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.896	25	85	IPR001356	Homeobox domain
SMART	SM00389	2.8E-17	28	89	IPR001356	Homeobox domain
CDD	cd00086	2.05E-15	30	86	No hit	No description
Pfam	PF00046	5.2E-17	30	83	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.1E-19	31	92	IPR009057	Homeodomain-like
PRINTS	PR00031	7.1E-6	56	65	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	60	83	IPR017970	Homeobox, conserved site
PRINTS	PR00031	7.1E-6	65	81	IPR000047	Helix-turn-helix motif
Pfam	PF02183	8.3E-14	85	126	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0009615	Biological Process	response to virus
GO:0009651	Biological Process	response to salt stress
GO:0009737	Biological Process	response to abscisic acid
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
METEDYSAAE EAESSYISMD PLLAKSRSDK KRRFSEEQVK SLESIFESQA KLEPRKKLQL 60 AKELGLQPRQ VAIWFQNKRA RWKSKQLERE YEALKANYDT LLSSVESLKK EKQILVKQSQ 120 KLTELLKNPS EESNGKREED ARPCLLVYSG DEEKNLGFFN REEAEYLYMG EPESSYLTSI 180 EQPCDLNCSS SPEQRCTTPP EWWESWPLTE

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269\|PubMed:10732669}.
UniProt	Probable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269\|PubMed:10732669}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00650	PBM	Transfer from LOC_Os09g35910	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008810697.1	1e-149	homeobox-leucine zipper protein ATHB-12-like
Swissprot	Q651Z5	4e-49	HOX6_ORYSJ; Homeobox-leucine zipper protein HOX6
Swissprot	Q9XH35	4e-49	HOX6_ORYSI; Homeobox-leucine zipper protein HOX6
TrEMBL	A0A2H3ZA24	1e-148	A0A2H3ZA24_PHODC; homeobox-leucine zipper protein ATHB-12-like
STRING	XP_008810697.1	1e-149	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7873	34	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61890.1	2e-47	homeobox 12

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]