PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s720491g004

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

G2-like

Protein Properties

Length: 260aa MW: 29243.9 Da PI: 9.1817

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s720491g004	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	92.6	3.2e-29	175	225	2	52
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQk 52 pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ PDK_30s720491g004 175 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQD 225 9*************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.08E-13	172	225	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.3E-25	173	227	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.9E-21	175	226	IPR006447	Myb domain, plants
Pfam	PF00249	1.1E-6	176	226	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MELFPAQPDL SLQISPPDSK PTSSWGKSDE SLDLGFWRRA MDSSSSSIKS SITPSTSKAD 60 TGGFDLSLAN PSVSNTNTTD HLPHHHFHLH QHEQLLHDGY HQDLGITRPI RGIPVYQTPP 120 SFSFLQRRQQ HQNQHHQLLC DSSSTTASTP YTMQGMPRSP RLLPRFPAKR GMRAPRMRWT 180 TTLHARFVHA VELLGGHERA TPKSVLELMD VKDLTLAHVK SHLQDMQSKS FEMVSDLNSS 240 CLSDMSTKKP NLEFTLGRPH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-14	176	231	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-14	176	231	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-14	176	231	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-14	176	231	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-14	176	231	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-14	176	231	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-14	176	231	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-14	176	231	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269\|PubMed:11525739, ECO:0000269\|PubMed:15286295, ECO:0000269\|PubMed:16623911, ECO:0000269\|PubMed:17307928}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_026663270.1	1e-119	probable transcription factor KAN2
Swissprot	Q9C616	8e-56	KAN2_ARATH; Probable transcription factor KAN2
TrEMBL	A0A3Q0ICH3	1e-117	A0A3Q0ICH3_PHODC; probable transcription factor KAN2
STRING	XP_008800121.1	1e-113	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9438	34	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17695.1	6e-39	G2-like family protein

Publications ? help Back to Top
Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis. Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71 [PMID:26108442]