PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s722152g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family WRKY
Protein Properties Length: 324aa    MW: 36271.4 Da    PI: 8.428
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s722152g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY89.72.4e-28191245359
                        -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        Dgy  rKYGqK vk+s++prsYYrCt+++C+vkk+vers edp++v++tYeg+H+h+
  PDK_30s722152g002 191 DGY--RKYGQKAVKNSPYPRSYYRCTTQKCSVKKRVERSYEDPTIVITTYEGQHTHQ 245
                        666..9**************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-29174247IPR003657WRKY domain
SuperFamilySSF1182901.31E-24181247IPR003657WRKY domain
PROSITE profilePS5081126.475184247IPR003657WRKY domain
SMARTSM007743.5E-32189246IPR003657WRKY domain
PfamPF031066.1E-21193245IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MSGEKRELYH HEHHFHDDLS PFFSQRPGPG ALQELQGFHL QAASPYISFT DYLSGSSDYG  60
LLTKTFDTSY SSPELFAPHD GGLVKRELVA DTNIGPNLNV SAGGGDGSTT PLTPNSSFSS  120
SSTEAAGEED SGRCKKDRQK VVEEEKQQLK GSEEGGDKSK KVSRPRKKAE KRQRQPRFAF  180
MTKSEVDHLE DGYRKYGQKA VKNSPYPRSY YRCTTQKCSV KKRVERSYED PTIVITTYEG  240
QHTHQSPATI RGSTHILAPP PTVPTSFRQD FLMHQMPQLS ARSQQGEANP SMYLPTLPPL  300
QHPQFPDYGL LQDIVPAFIH NKQP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-23179248778Probable WRKY transcription factor 4
2lex_A2e-23179248778Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00440DAPTransfer from AT4G18170Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008798309.10.0WRKY transcription factor 28-like
TrEMBLA0A2H3YGU50.0A0A2H3YGU5_PHODC; WRKY transcription factor 28-like
STRINGXP_008798309.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62337173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18170.11e-51WRKY DNA-binding protein 28