PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s723051g005

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

WRKY

Protein Properties

Length: 205aa MW: 22303.5 Da PI: 5.2964

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s723051g005	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	101.5	5e-32	119	177	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 l+Dg++WrKYG+K+vk+s++pr+YYrC+++gCpvkk+ver++edp++v++tYeg+Hnh PDK_30s723051g005 119 LNDGFKWRKYGKKSVKNSPNPRNYYRCSTEGCPVKKRVERDKEDPSYVITTYEGTHNHM 177 58********************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.4E-34	106	179	IPR003657	WRKY domain
SuperFamily	SSF118290	3.14E-28	111	178	IPR003657	WRKY domain
PROSITE profile	PS50811	31.261	114	179	IPR003657	WRKY domain
SMART	SM00774	8.1E-36	119	178	IPR003657	WRKY domain
Pfam	PF03106	6.9E-26	120	176	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MAAVGTPLYG QANMAYFSSQ AGQGSGSVYD DLQSDQPAAF DLSDYISLYE GLPPASFGQP 60 ESTAVPPMVV DADHTASQIS GSNLTTSSSS STRRSGEESL RMVEGSRIAF RTKSEVEILN 120 DGFKWRKYGK KSVKNSPNPR NYYRCSTEGC PVKKRVERDK EDPSYVITTY EGTHNHMSPG 180 VVYYTTQDDA SGRFYVAGCG LPPDS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	6e-28	106	180	1	76	WRKY transcription factor 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Involved in defense responses. May act as positive regulator of salicylic acid (SA)-mediated signaling and negative regulator of jasmonic acid (JA)-mediated signaling (PubMed:21030507). {ECO:0000250, ECO:0000269\|PubMed:21030507}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ307149	2e-34	DQ307149.1 Cocos nucifera putative WRKY transcription factor 01 gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008812294.1	1e-152	probable WRKY transcription factor 50
Swissprot	Q93WU9	4e-41	WRK51_ARATH; Probable WRKY transcription factor 51
TrEMBL	A0A2H3ZDW2	1e-150	A0A2H3ZDW2_PHODC; probable WRKY transcription factor 50
STRING	XP_008812294.1	1e-151	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP441	37	206

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26170.1	1e-42	WRKY DNA-binding protein 50

Publications ? help Back to Top
Yan C, et al. Injury Activates Ca2+/Calmodulin-Dependent Phosphorylation of JAV1-JAZ8-WRKY51 Complex for Jasmonate Biosynthesis. Mol. Cell, 2018. 70(1): p. 136-149.e7 [PMID:29625034]