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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
PDK_30s724371g001 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 268aa MW: 29517.1 Da PI: 10.2138 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PDK_30s724371g001 | genome | PDK | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 296.6 | 9.6e-91 | 1 | 268 | 1 | 301 |
GAGA_bind 1 mdddgsre.rnkgyyepaaslkenlglqlmssiaerdaki.rernlalsekkaavaerd..maflqrdkalaernkalverdnkllalllve 88
mdddg rn++yye+ lk nlglqlmss+a+r a +n + +++ ++ e +++ rd ++ + r+nk++++++++
PDK_30s724371g001 1 MDDDGGLGmRNWAYYEQP--LKGNLGLQLMSSVADRTATKpLLSNGGFFHRDCSMPEPPapIEY-VRDGWIGH-------RENKMIHMMPAN 82
999999888********9..**************997644255555555555554433355888.88999988.......9*********66 PP
GAGA_bind 89 nslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkk 180
s ++vl++++ ++ l + l++ +++l++ + p+ + + + ke++ kk +++k++k kk+kk +++++ ++
PDK_30s724371g001 83 PS--------YSVLPDAHGAHALPM-----LQP-PEPLKD---DKMIPMMDDPGSRKEAPLKK----RAHAKASKPKKPKKVA-APRNE-TS 151
54........899********9999.....433.333333...34567777777777766665....5677888889999844.44333.33 PP
GAGA_bind 181 esaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekL 272
+++ +r ++ +ks+d+v+ng++lD+s++P+PvCsCtG+++qCY+WG GGWqSaCCtt+iS+yPLP+stkrrgaRiagrKmSqgafkk L
PDK_30s724371g001 152 NGSLPRGRNVRKSMDVVINGIDLDISGIPTPVCSCTGTPQQCYRWGVGGWQSACCTTSISMYPLPMSTKRRGARIAGRKMSQGAFKK----L 239
343489*******************************************************************************96....8 PP
GAGA_bind 273 aaeGydlsnpvDLkdhWAkHGtnkfvtir 301
a+eGy+lsnp+DLk++WAkHGtnkfvtir
PDK_30s724371g001 240 AGEGYNLSNPIDLKTYWAKHGTNKFVTIR 268
****************************8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 268 aa
Download sequence Send
to blast |
MDDDGGLGMR NWAYYEQPLK GNLGLQLMSS VADRTATKPL LSNGGFFHRD CSMPEPPAPI 60
EYVRDGWIGH RENKMIHMMP ANPSYSVLPD AHGAHALPML QPPEPLKDDK MIPMMDDPGS 120
RKEAPLKKRA HAKASKPKKP KKVAAPRNET SNGSLPRGRN VRKSMDVVIN GIDLDISGIP 180
TPVCSCTGTP QQCYRWGVGG WQSACCTTSI SMYPLPMSTK RRGARIAGRK MSQGAFKKLA 240
GEGYNLSNPI DLKTYWAKHG TNKFVTIR
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Positively regulates the homeotic gene BKN3. {ECO:0000269|PubMed:12795701}. |
