PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s724491g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB_related
Protein Properties Length: 309aa    MW: 33883.8 Da    PI: 5.9073
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s724491g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.73.5e-1559104148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        rg+  ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
  PDK_30s724491g001  59 RGPIAPDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 104
                        566679****************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-81155IPR009057Homeodomain-like
PROSITE profilePS500906.0751553IPR017877Myb-like domain
SuperFamilySSF466893.82E-2217100IPR009057Homeodomain-like
SMARTSM007170.0481955IPR001005SANT/Myb domain
CDDcd001673.18E-42253No hitNo description
PROSITE profilePS5129424.90854108IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-2456109IPR009057Homeodomain-like
SMARTSM007172.7E-1458106IPR001005SANT/Myb domain
PfamPF002496.3E-1460104IPR001005SANT/Myb domain
CDDcd001679.08E-1264104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010090Biological Processtrichome morphogenesis
GO:0010468Biological Processregulation of gene expression
GO:0048354Biological Processmucilage biosynthetic process involved in seed coat development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MKQRQKGAPT PCCSKVGLKR GPWTPEEDEV LKKFRAGLLR CGKSCRLRWM NYLRPSVKRG  60
PIAPDEEDLI LRLHRLLGNR WSLIAGRIPG RTDNEIKNYW NTHLSKKLIS QGIDPRTHKP  120
LISSSSTTSP DPLLPEGPKI QLPPTMPYHN PNRGANPSPP IPSVLQQTSG DQGGAGIHAD  180
QDDFFGGLSL ERDDGWQNSE GFPAMNLQGS QGAADSGEDG AIDCCTDDVF SSFLDSLIND  240
DIVLQNQQQD VTYNDNNNSN DGKIQSNDPI MSTSAPGFGL GTLWKSTFTS PVISLDEEIH  300
GQFVDHAGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-21181085108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1082596e-63AK108259.1 Oryza sativa Japonica Group cDNA clone:002-141-A12, full insert sequence.
GenBankD886206e-63D88620.1 Oryza sativa mRNA for OSMYB4, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008791485.10.0transcription repressor MYB5-like
SwissprotQ388507e-70MYB5_ARATH; Transcription repressor MYB5
TrEMBLA0A2H3Y0H20.0A0A2H3Y0H2_PHODC; transcription repressor MYB5-like
STRINGXP_008791485.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.13e-71myb domain protein 5
Publications ? help Back to Top
  1. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]