PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s725571g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB_related
Protein Properties Length: 280aa    MW: 31170.2 Da    PI: 8.1409
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s725571g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.92.4e-133983347
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                       +WT+eE+  ++ + ++lG+g+W+ Iar +   Rt+ q+ s+ qky
  PDK_30s725571g001 39 PWTEEEHRMFLLGLQKLGKGDWRGIARNFVVSRTPTQVASHAQKY 83
                       8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.8883288IPR017930Myb domain
SMARTSM007173.5E-103686IPR001005SANT/Myb domain
SuperFamilySSF466898.61E-163889IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.1E-123882IPR009057Homeodomain-like
TIGRFAMsTIGR015576.6E-193887IPR006447Myb domain, plants
PfamPF002496.1E-113983IPR001005SANT/Myb domain
CDDcd001671.10E-93984No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MTRRCSHCSN NGHNSRTCPT RAGGVRLFGV RLTDGVGVPW TEEEHRMFLL GLQKLGKGDW  60
RGIARNFVVS RTPTQVASHA QKYFIRQTNA SRRKRRSSLF DMVPEMPMDQ LPVPEERFVH  120
QSPNEPDNAN QHPALNLYQD QEPELSEHFT KNNPPQELNE TVPYGNNLMS VVPAFYLASI  180
PMPYTFWPPD LNAPAKQETG EMHEIVKPTP VVPKEAVNMD EVAGMSKLSI GEHAAGRMEP  240
SALSLKLLGA STSRQSAFHL NPSISRPDLS QGSSNAIHAV
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN2032720.0JN203272.1 Elaeis guineensis putative MYB transcription factor-like protein mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008791498.10.0transcription factor MYBS3-like
SwissprotQ7XC572e-70MYBS3_ORYSJ; Transcription factor MYBS3
TrEMBLA0A2H3Y0981e-179A0A2H3Y098_PHODC; transcription factor MYBS3-like
STRINGXP_008791498.11e-180(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19393791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.13e-61MYB_related family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Su CF, et al.
    A novel MYBS3-dependent pathway confers cold tolerance in rice.
    Plant Physiol., 2010. 153(1): p. 145-58
    [PMID:20130099]