PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s725811g009

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

C2H2

Protein Properties

Length: 197aa MW: 21671 Da PI: 6.0793

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s725811g009	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.4	0.00024	40	61	1	22
EEETTTTEEESSHHHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt 22 y+C +C++sF r L H PDK_30s725811g009 40 YRCAYCDRSFVRFQALGGHHAA 61 9**********99888777665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	1.1E-7	39	62	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.75E-5	39	66	No hit	No description
PROSITE profile	PS50157	10.658	40	67	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	42	62	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence Send to blast
MNCSDHGRRF PYHDFLGGDM QYLHFGARDE PQVSAPPAAY RCAYCDRSFV RFQALGGHHA 60 AHAREMKRQW QQEEKAAASS DCPGSVPRPL NHKGRVAAGG REQGNNLAAC NATPAVPLKA 120 MDWESSISVG SQHSQLVDYM GVQSQRIRVA LWDIKTTDGS SEETLIDPEA NLSEENNTGS 180 REVALGCSEE IDLTLRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27730.1	1e-07	salt tolerance zinc finger