PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s726031g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB_related
Protein Properties Length: 298aa    MW: 32286.4 Da    PI: 10.1691
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s726031g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.62.9e-13103148247
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        ++WT+eE+  ++ + + lG+g+W+ I+r + ++Rt+ q+ s+ qky
  PDK_30s726031g002 103 LPWTEEEHRSFLTGLEILGKGDWRGISRSFVTTRTPTQVASHAQKY 148
                        69*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.664318IPR001878Zinc finger, CCHC-type
Gene3DG3DSA:4.10.60.106.0E-4423IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129415.88996153IPR017930Myb domain
SuperFamilySSF466891.2E-1799154IPR009057Homeodomain-like
TIGRFAMsTIGR015574.7E-17100152IPR006447Myb domain, plants
SMARTSM007173.5E-9101151IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-9103147IPR009057Homeodomain-like
PfamPF002492.1E-10104148IPR001005SANT/Myb domain
CDDcd001671.17E-8104149No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MGRKCSHCGN NGHNSRTCST PRGVVGSGGL RLFGVQLLLT YPMKKSLSTE CLASSSYLAS  60
SSASPSSSCS SSLVSIDETT KKISNGYLSD GLLGATPERK KGLPWTEEEH RSFLTGLEIL  120
GKGDWRGISR SFVTTRTPTQ VASHAQKYFL RQNSLNEKKR RSSVFDVFKE PSISSELHAP  180
PTLTTYCGAS SQIIAIDLNS SEQETQLPSS LPLMPNSSAC PLPQSPLVER PRAHLSPLNL  240
ELGISSTRPL DQNNSSPNSL FVGTIRVTKV AGRHRTDSPF GVQRFLKTHN SGRKGYTT
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00565DAPTransfer from AT5G56840Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008795522.10.0transcription factor KUA1-like
SwissprotQ7XC571e-47MYBS3_ORYSJ; Transcription factor MYBS3
TrEMBLA0A2H3Y9S80.0A0A2H3Y9S8_PHODC; transcription factor KUA1-like
STRINGXP_008795522.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42313873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.12e-52MYB_related family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Su CF, et al.
    A novel MYBS3-dependent pathway confers cold tolerance in rice.
    Plant Physiol., 2010. 153(1): p. 145-58
    [PMID:20130099]