PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s729201g003
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB_related
Protein Properties Length: 127aa    MW: 14366.3 Da    PI: 4.7475
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s729201g003genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.94.7e-081446132
                       TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmg 32
                       +g+W++eEd +l+++ +++G+g +W + +++ g
  PDK_30s729201g003 14 KGPWSPEEDRQLKEYMEKYGTGgNWIALPHKAG 46
                       79***********************88887766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.0E-10541IPR009057Homeodomain-like
PROSITE profilePS500906.504958IPR017877Myb-like domain
SuperFamilySSF466893.74E-61145IPR009057Homeodomain-like
PfamPF002499.6E-71445IPR001005SANT/Myb domain
CDDcd001671.43E-41644No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MGRAPCCDKA IVKKGPWSPE EDRQLKEYME KYGTGGNWIA LPHKAGVLFG WFFEQMRSLE  60
SFLYGGMEET QKLFLGDGEA SLEYNIEEIK PLVGPNSWCN SLFGDDLSSA TTKDISFKPP  120
GKAMYYY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008789582.12e-43transcription repressor MYB6-like
TrEMBLA0A2H3XW605e-42A0A2H3XW60_PHODC; transcription repressor MYB6-like
STRINGXP_008789582.18e-43(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36890.12e-24MYB family protein