PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s729581g007
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family TALE
Protein Properties Length: 308aa    MW: 35324.2 Da    PI: 8.553
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s729581g007genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.82.2e-09811152155
                        HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
           Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                        k +yp+++++  LA+++gL+ +q+ +WF N+R ++
  PDK_30s729581g007  81 KWPYPTEADKIALAESTGLDPKQINNWFINQRKRH 115
                        569*****************************885 PP
2ELK353.2e-123556122
                ELK  1 ELKhqLlrKYsgyLgsLkqEFs 22
                       +LK+ LlrKYsgyLgsLk EFs
  PDK_30s729581g007 35 DLKDKLLRKYSGYLGSLKREFS 56
                       69*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF037896.7E-103556IPR005539ELK domain
SMARTSM011884.9E-73556IPR005539ELK domain
PROSITE profilePS5121310.9993555IPR005539ELK domain
PROSITE profilePS5007112.84355118IPR001356Homeobox domain
SuperFamilySSF466891.37E-1956125IPR009057Homeodomain-like
SMARTSM003896.7E-1457122IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.1E-2760119IPR009057Homeodomain-like
CDDcd000869.19E-1267119No hitNo description
PfamPF059209.2E-1875114IPR008422Homeobox KN domain
PROSITE patternPS00027093116IPR017970Homeobox, conserved site
PfamPF012095.1E-33135302IPR004033UbiE/COQ5 methyltransferase
Gene3DG3DSA:3.40.50.1505.5E-29143299IPR029063S-adenosyl-L-methionine-dependent methyltransferase
CDDcd024404.06E-8146227No hitNo description
SuperFamilySSF533356.66E-23147299IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0032259Biological Processmethylation
GO:0042372Biological Processphylloquinone biosynthetic process
GO:0009507Cellular Componentchloroplast
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0052624Molecular Function2-phytyl-1,4-naphthoquinone methyltransferase activity
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MCLIRTDETA GSSEEEFNGG EVEVQELQSK SEDRDLKDKL LRKYSGYLGS LKREFSKKKK  60
KGKLPKEARR KLLDWWEAHY KWPYPTEADK IALAESTGLD PKQINNWFIN QRKRHWRPSE  120
NMPFAAERGA EPRPASDLEE DVRLLGRVSA LDFSKDQLLI ATARQDLYWK ACYKNIEWIE  180
GDALELPFAD SNFDAITVGY GLRNLLDKHK AMKEIFRVLK PGSRVSILDF NKSTSTLITQ  240
SQEWMIDNVV VPVASNYGFS REYRYLKASI AEYLTGKELE KLAKEVGFSD AKHYEIAGGL  300
MGNLVAAR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15670KKKKKGKLPKEARRK
25671KKKKKGKLPKEARRKL
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the biosynthesis of phylloquinone (vitamin K1). Methyltransferase required for the conversion of 2-phytyl-1,4-beta-naphthoquinol to phylloquinol. {ECO:0000255|HAMAP-Rule:MF_03192, ECO:0000269|PubMed:17082184}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026659100.11e-1142-phytyl-1,4-beta-naphthoquinone methyltransferase, chloroplastic isoform X1
SwissprotQ3ED651e-73MENG_ARATH; 2-phytyl-1,4-beta-naphthoquinone methyltransferase, chloroplastic
TrEMBLA0A3Q0I0D91e-112A0A3Q0I0D9_PHODC; 2-phytyl-1,4-beta-naphthoquinone methyltransferase, chloroplastic isoform X1
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.29e-41KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Lange BM,Ghassemian M
    Genome organization in Arabidopsis thaliana: a survey for genes involved in isoprenoid and chlorophyll metabolism.
    Plant Mol. Biol., 2003. 51(6): p. 925-48
    [PMID:12777052]
  2. Gross J, et al.
    A plant locus essential for phylloquinone (vitamin K1) biosynthesis originated from a fusion of four eubacterial genes.
    J. Biol. Chem., 2006. 281(25): p. 17189-96
    [PMID:16617180]
  3. Lohmann A, et al.
    Deficiency in phylloquinone (vitamin K1) methylation affects prenyl quinone distribution, photosystem I abundance, and anthocyanin accumulation in the Arabidopsis AtmenG mutant.
    J. Biol. Chem., 2006. 281(52): p. 40461-72
    [PMID:17082184]