PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s729711g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB_related
Protein Properties Length: 280aa    MW: 31053 Da    PI: 11.025
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s729711g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.95.4e-091446437
                       S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS
    Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtl 37
                       W t E++ll++av ++G+++W+++a ++  +R++
  PDK_30s729711g001 14 WGTLEELLLACAVSRHGTRSWDSVAMEIR-TRSA 46
                       9999*************************.6654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.04666IPR017877Myb-like domain
PfamPF002492.0E-81463IPR001005SANT/Myb domain
CDDcd001675.76E-61465No hitNo description
Gene3DG3DSA:1.10.10.606.1E-41464IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MARSTDPEAA AEIWGTLEEL LLACAVSRHG TRSWDSVAME IRTRSASADQ FLLTPEGCRK  60
RYRELQCRFS AADGEIGVDG DAGDGCGRPG VEIPWLEELR KLRVAELRRE GGKEDKEELR  120
VDRKERDVEE YEIPAKKRKN ERSAVAGPRE FSGSNGEITE EERRRRSRVG KGAGEIMNRM  180
NRSSPTSNGA LPNTLRSSAS SGDGGKGAEQ RKKVGRRNGR NRYSRLSLGA ATSKREAKQS  240
APVKRSVGRP RKRAVAPPPP PPVKKAAEEV GRILRKRVRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008782863.28e-71splicing factor, arginine/serine-rich 19
TrEMBLA0A2H3XF552e-69A0A2H3XF55_PHODC; splicing factor, arginine/serine-rich 19
STRINGXP_008782863.15e-70(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31812648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44430.15e-24DNA-binding bromodomain-containing protein