PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s731481g003
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family C2H2
Protein Properties Length: 149aa    MW: 15159.2 Da    PI: 8.8512
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s731481g003genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.00017628123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       ykC+ Cgk F +   L  H  +H
  PDK_30s731481g003  6 YKCSVCGKAFASFQALGGHKASH 28
                       9**********999998888777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139129.2E-13530IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.699628IPR007087Zinc finger, C2H2
SMARTSM003550.014628IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.16E-9628No hitNo description
Gene3DG3DSA:3.30.160.604.0E-5628IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SuperFamilySSF576671.16E-95582No hitNo description
PfamPF139124.9E-145984IPR007087Zinc finger, C2H2
SMARTSM003550.266082IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.9956082IPR007087Zinc finger, C2H2
PROSITE patternPS0002806282IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009644Biological Processresponse to high light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010117Biological Processphotoprotection
GO:0010200Biological Processresponse to chitin
GO:0015979Biological Processphotosynthesis
GO:0035264Biological Processmulticellular organism growth
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MGKLAYKCSV CGKAFASFQA LGGHKASHRK LSGGEDSTAS PVVSASGSST VAASGGGRVH  60
QCSVCLKTFP SGQALGGHKR CHYDGNLGGK VAGVASMSEG AGSSDKGFDL NMPAVPEFAF  120
DAARRCVAAE EEEVQSPLAF KKPRLLIPA
Functional Description ? help Back to Top
Source Description
UniProtPotential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00162DAPTransfer from AT1G27730Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008792675.11e-103zinc finger protein ZAT10
SwissprotQ424305e-40ZFP1_WHEAT; Zinc finger protein 1
TrEMBLA0A2H3Y3331e-102A0A2H3Y333_PHODC; zinc finger protein ZAT10
STRINGXP_008792675.11e-102(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102236113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.14e-36salt tolerance zinc finger