PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s731801g005

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

HB-other

Protein Properties

Length: 151aa MW: 17651.9 Da PI: 7.6858

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s731801g005	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	64	2.2e-20	17	71	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r+ +++t++q+++Le++F++ ++p++++r +L++ lgL+ rq+k+WFqN+R+++k PDK_30s731801g005 17 RRCQRHTPKQIQALEAMFNMYPHPDEKQRMQLSRDLGLEPRQIKFWFQNKRTQMK 71 333689**********************************************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.7E-22	3	67	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.75E-19	8	72	IPR009057	Homeodomain-like
SMART	SM00389	3.3E-16	13	77	IPR001356	Homeobox domain
PROSITE profile	PS50071	17.54	13	73	IPR001356	Homeobox domain
Pfam	PF00046	6.7E-18	17	71	IPR001356	Homeobox domain
CDD	cd00086	1.48E-15	23	71	No hit	No description
PRINTS	PR00031	9.7E-5	44	53	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	48	71	IPR017970	Homeobox, conserved site
PRINTS	PR00031	9.7E-5	53	69	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 151 aa Download sequence Send to blast
MDSGDEPEAA EQQRRKRRCQ RHTPKQIQAL EAMFNMYPHP DEKQRMQLSR DLGLEPRQIK 60 FWFQNKRTQM KESTSSPCFC CHERADNSTL RAENDKVRCE NIAMKEALKN AICPSCGGPP 120 TDGDSSLNEQ KLWMENVRLK EELLDRTTNC Y

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008799024.1	3e-78	homeobox-leucine zipper protein ROC8-like
Swissprot	Q69T58	5e-62	ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8
TrEMBL	A0A2H3YII4	7e-77	A0A2H3YII4_PHODC; homeobox-leucine zipper protein ROC8-like
STRING	XP_008799024.1	1e-77	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15929	9	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G73360.1	3e-53	homeodomain GLABROUS 11