PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s732391g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family bHLH
Protein Properties Length: 609aa    MW: 68486.1 Da    PI: 5.931
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s732391g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.91.7e-13376423355
                        HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        ++h   ErrRR+++N++f  Lr+l+P        K++Ka+iL  ++eY+k+L+
  PDK_30s732391g001 376 ASHVLSERRRREKLNEKFLVLRSLVPFV-----SKVDKASILGGTIEYLKELE 423
                        689999*********************6.....5****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142157.9E-26112276IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.384373422IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-18375441IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.9E-11376423IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.0E-18377433IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.06E-13377420No hitNo description
SMARTSM003537.4E-17379428IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048629Biological Processtrichome patterning
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 609 aa     Download sequence    Send to blast
MGLSFFFLYS FFFFFFSPLL SWQNRGFKVW TSDYDRCGPM RWQQEFQSIS LQNPSGNRSI  60
EKGRLEKEDS VLLPASASTM PPISGRHSDG RHRTPTREER KGEVLGDGNP WRGVLAWRDG  120
YYNGDIKTRK TTQLMEFKAD QIALQRSEQL RELYESLSAG DSKQPSTRPA SLSPEDLTEA  180
EWLPGKALTS NQYIWLSNAQ FADSGIFSRS LLAKNSKVGG DRRNFLTWPN LSCISTSSLH  240
VKTVVCIPFM YGVLELGTAE LVLEDPALIH QIRTSFWELP IPVCSGQSIS SSPLAEKDED  300
TLFPNLDHEV VDTMVSEDHH LMAACLAPLE SGPSAVPFDI HSHVLDKENE LIQDKVEELC  360
ANISEELKVG SPDASASHVL SERRRREKLN EKFLVLRSLV PFVSKVDKAS ILGGTIEYLK  420
ELERRVEELE SCRELGKPEP RGRRMHPDIA ERTSDNYGNK KIANGMQSCA NKRKACDIDE  480
TAVEHCGVLS KDGPVNVIVT VMEKEVLLEL QCQWRECLLL EVVDAIRNLH LDPLSVQSST  540
GDNNLAVTIK AKFKGSVVAS PGMIKRTLQR VVVVLSVTRL CSSVDDFIYI CLDIYNVYHV  600
FFAMVFSLI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1381386ERRRRE
2382387RRRREK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008794213.10.0transcription factor GLABRA 3-like
TrEMBLA0A2H3Y7780.0A0A2H3Y778_PHODC; transcription factor GLABRA 3-like
STRINGXP_008794213.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP93233109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00480.14e-50bHLH family protein