PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s733601g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family C3H
Protein Properties Length: 526aa    MW: 58388.9 Da    PI: 8.4315
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s733601g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.56.2e-10152172727
                        SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   7 rffartGtCkyGdrCkFaHgp 27 
                        rff++tGtCk+G++Ck++H++
  PDK_30s733601g002 152 RFFLKTGTCKFGATCKYHHPQ 172
                        79*****************97 PP
2zf-CCCH36.39.3e-12194217427
                        ---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                        + C++++rtG Ck+G  CkF+H++
  PDK_30s733601g002 194 KSCPYYMRTGLCKFGIACKFNHPQ 217
                        56********************97 PP
3zf-CCCH39.11.2e-12365390227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                        ++++C+++++tG CkyG +Ck++H++
  PDK_30s733601g002 365 DQPECQYYMKTGSCKYGTSCKYHHPK 390
                        689*********************96 PP
4zf-CCCH34.63.1e-11409435127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        ++++ C f++ +G CkyG++CkF H++
  PDK_30s733601g002 409 PGQPVCTFYSMYGSCKYGSTCKFDHPF 435
                        5789*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.038150172IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.6E-4152173IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.244152173IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-7152172IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-6189218IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.061190218IPR000571Zinc finger, CCCH-type
SMARTSM003569.8E-5192217IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-9193217IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-4195216IPR000571Zinc finger, CCCH-type
SMARTSM003569.7E-6363390IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.986363391IPR000571Zinc finger, CCCH-type
PfamPF006426.8E-10365390IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-6366392IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-5369391IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.23E-5407434IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.474408436IPR000571Zinc finger, CCCH-type
SMARTSM003564.0E-6408435IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-8410435IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-4413433IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MVTTTSITTT IITIRITITT TTTTTIATTI TIKGVNASRR LRSEGGMKFS KAKEKGERGA  60
RVIIVVVLIV EVMVVVVVVV VVTVLIVLVV VGVWVTRGQE GDCCGDGVDF GGDGGGGSNG  120
CGDEGAYGDG DGLLRDFLRM GRLMCHKGKL ERFFLKTGTC KFGATCKYHH PQDKHEPRPV  180
QLNILGLPMR KDEKSCPYYM RTGLCKFGIA CKFNHPQPTS HAAMLPNVDI KVLLYDYNLC  240
FLYSERFRCI IGVMLDFVLE LPSASGKEWH KISNKMTNKI CNKKSYLMIT KPIRTNIEGL  300
DAKNMNEWMA DECERRYMQV LETLSKGGIN NVASTNVVGS TQISNPKHHA QSGSSAPVNF  360
PERPDQPECQ YYMKTGSCKY GTSCKYHHPK ERNQVAMCTI GPLGLPLRPG QPVCTFYSMY  420
GSCKYGSTCK FDHPFMGYYN YTLPAFSIPG APDHSVLFPD PRNSQAVWMS SEDSPSKTMR  480
LPDQHVKSET SEEPQDSNDY NHGNHSSQTS PSHIARHSEF PEKYSD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008803512.10.0zinc finger CCCH domain-containing protein ZFN-like isoform X1
TrEMBLA0A2H3YTC10.0A0A2H3YTC1_PHODC; zinc finger CCCH domain-containing protein ZFN-like isoform X1
STRINGXP_008803512.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.38e-48C3H family protein