PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s734241g002

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

MYB_related

Protein Properties

Length: 581aa MW: 65858.7 Da PI: 5.9471

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s734241g002	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	33.2	1.2e-10	3	45	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k++++ W+tIa +g Rt+ qc +r+ k+l PDK_30s734241g002 3 EWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 45 7***************99.****8..********9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	6.5E-9	1	47	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	18.567	1	49	IPR017930	Myb domain
CDD	cd11659	4.91E-27	2	48	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.0E-10	3	46	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.92E-11	3	50	IPR009057	Homeodomain-like
Pfam	PF13921	1.4E-9	4	53	No hit	No description
Pfam	PF11831	2.0E-51	349	577	IPR021786	Pre-mRNA splicing factor component Cdc5p/Cef1

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 581 aa Download sequence Send to blast
MTEWTREEDE KLLHLAKLMP TQWRTIAPIV GRTPSQCLER YEKLLDAACA KDENYEPSDD 60 PRKLRPGEID PNPESKPARP DPVDMDEDEK EMLSEARARL ANTRGKKAKR KAREKQLEEA 120 RRLASLQKRR ELKAAGIDTR HRKRKRKGID YNAEIPFEKR PPPGFFDVLG EERPVEQPKF 180 PTTIEELEGK RRVDMEAQLR KQDIARNKIA QRQDAPAAIL QANKLNDPEA VRKRSKLMLP 240 APQISDQELE EIAKMGYASD LVLANEELAE GSGATRALLA HYSQTPRQGM TPLRTPQRTP 300 AGKGDAIMME AENLARLRES QTPLLGGENP ELHPSDFSGV TPRKREIQTP NPMATPLATP 360 GAAGLTPIIG MTPSRDTYSL GATPKGTPFR DELHINEDME MQDSAKLELR RQAELRKTLR 420 SGLTNLPQPR NEYQIVIQPI SEETEETEEK IEEDMSDRIA REKAQEQARQ EALLRKRSKV 480 LQRELPRPPA ASMELIRNSL MSSDEDKSSF VPPTLFEQAD EMINKELLAL LEHDNAKYPL 540 DEKQEKEKKK GAKRAANGKA KPVPEIENSD EAELKEILEV I

Sequence ? help Back to Top

Protein Sequence Length: 581 aa Download sequence Send to blast

MTEWTREEDE KLLHLAKLMP TQWRTIAPIV GRTPSQCLER YEKLLDAACA KDENYEPSDD  60
PRKLRPGEID PNPESKPARP DPVDMDEDEK EMLSEARARL ANTRGKKAKR KAREKQLEEA  120
RRLASLQKRR ELKAAGIDTR HRKRKRKGID YNAEIPFEKR PPPGFFDVLG EERPVEQPKF  180
PTTIEELEGK RRVDMEAQLR KQDIARNKIA QRQDAPAAIL QANKLNDPEA VRKRSKLMLP  240
APQISDQELE EIAKMGYASD LVLANEELAE GSGATRALLA HYSQTPRQGM TPLRTPQRTP  300
AGKGDAIMME AENLARLRES QTPLLGGENP ELHPSDFSGV TPRKREIQTP NPMATPLATP  360
GAAGLTPIIG MTPSRDTYSL GATPKGTPFR DELHINEDME MQDSAKLELR RQAELRKTLR  420
SGLTNLPQPR NEYQIVIQPI SEETEETEEK IEEDMSDRIA REKAQEQARQ EALLRKRSKV  480
LQRELPRPPA ASMELIRNSL MSSDEDKSSF VPPTLFEQAD EMINKELLAL LEHDNAKYPL  540
DEKQEKEKKK GAKRAANGKA KPVPEIENSD EAELKEILEV I

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5mqf_L	1e-145	2	541	61	593	Cell division cycle 5-like protein
5xjc_L	1e-145	2	541	61	593	Cell division cycle 5-like protein
5yzg_L	1e-145	2	541	61	593	Cell division cycle 5-like protein
5z56_L	1e-145	2	541	61	593	Cell division cycle 5-like protein
5z57_L	1e-145	2	541	61	593	Cell division cycle 5-like protein
5z58_L	1e-145	2	541	61	593	Cell division cycle 5-like protein
6ff4_L	1e-145	2	541	61	593	Cell division cycle 5-like protein
6ff7_L	1e-145	2	541	61	593	Cell division cycle 5-like protein
6icz_L	1e-145	2	541	61	593	Cell division cycle 5-like protein
6id0_L	1e-145	2	541	61	593	Cell division cycle 5-like protein
6id1_L	1e-145	2	541	61	593	Cell division cycle 5-like protein
6qdv_O	1e-145	2	541	61	593	Cell division cycle 5-like protein
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	127	146	KRRELKAAGIDTRHRKRKRK
2	141	146	RKRKRK

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250\|UniProtKB:Q99459, ECO:0000269\|PubMed:17298883, ECO:0000269\|PubMed:17575050, ECO:0000269\|PubMed:8917598}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_026665134.1	0.0	cell division cycle 5-like protein
Swissprot	P92948	0.0	CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBL	A0A3Q0IE61	0.0	A0A3Q0IE61_PHODC; cell division cycle 5-like protein
STRING	XP_008806744.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4416	35	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09770.1	0.0	cell division cycle 5

Publications ? help Back to Top
Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Li S, et al. MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis. Plant Cell, 2018. 30(2): p. 481-494 [PMID:29437988]