PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s734381g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family ERF
Protein Properties Length: 326aa    MW: 35729.7 Da    PI: 5.7563
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s734381g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.62.1e-20152201255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         y+GVr+++ +g+WvAeIr p++   r r +lg+f+taeeAa a+++a+ kl+g
  PDK_30s734381g001 152 LYRGVRQRH-WGKWVAEIRLPRN---RSRLWLGTFDTAEEAALAYDRAAYKLRG 201
                        59******9.**********955...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541718.5E-23152210IPR016177DNA-binding domain
PROSITE profilePS5103223.459152209IPR001471AP2/ERF domain
SMARTSM003802.0E-37152215IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-32152210IPR001471AP2/ERF domain
PRINTSPR003673.9E-11153164IPR001471AP2/ERF domain
PfamPF008472.4E-14153201IPR001471AP2/ERF domain
CDDcd000188.55E-32153209No hitNo description
PRINTSPR003673.9E-11175191IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MATAIDIFNS SSDPLREELL QALEPFIRGA SVPFSSYIAS SNTTTPEPLS PSSFPSPPPL  60
PWSYSPLFSS SSWTSTLSSD MIPQGYSQNF IRLSHLSPAQ IQQIQAKLLL QQQQQQQATA  120
ASTQQQSSLL GMRPQLMKRS GSPRPPPKPS KLYRGVRQRH WGKWVAEIRL PRNRSRLWLG  180
TFDTAEEAAL AYDRAAYKLR GDAAKLNFPQ LRHSGAHSSL SLDSSIDAKL QAISPSLVTS  240
KRQGSDSPDS VIPEGAGTKG ELGCSGSEDN KSESSSSVEG DESSSAVSEM QSLDFTEAPW  300
DESESFMLRK YPSWEIDWDS ILSSGQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-21151215469ATERF1
3gcc_A4e-21151215469ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ4676186e-32KJ467618.1 Lilium lancifolium DRE-binding protein mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008782127.11e-165ethylene-responsive transcription factor RAP2-4-like
TrEMBLA0A2H3XDL91e-164A0A2H3XDL9_PHODC; ethylene-responsive transcription factor RAP2-4-like
STRINGXP_008782127.11e-164(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.12e-28related to AP2 4