PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s737611g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

bHLH

Protein Properties

Length: 180aa MW: 20226.3 Da PI: 6.5182

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s737611g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14	9.1e-05	7	23	39	55
TCHHHHHHHHHHHHHHH CS HLH 39 sKaeiLekAveYIksLq 55 +K++i+ +Av+YIk+Lq PDK_30s737611g001 7 DKSTIVDEAVKYIKKLQ 23 8***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.3E-6	5	35	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.66E-5	5	40	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd04873	7.28E-4	105	137	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence Send to blast
MEMNEADKST IVDEAVKYIK KLQQNVQTLE KQKEERIRGV TLEEPSSQIQ RMETTTREAF 60 IADQVKNWAA ANSPTAVSIP RCRSSFQTWT SPNVVLNVTG PDAHISICTA KKPGILSSIV 120 YALEKHKLEV VSAQISSNIF RSMIMIHAHA SGISDQFPEM LMIEDLYKYA VGEMLLWLSP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_026658057.1	1e-127	transcription factor bHLH95
TrEMBL	A0A3Q0HX96	1e-125	A0A3Q0HX96_PHODC; transcription factor bHLH95
STRING	XP_008781647.1	1e-126	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2005	36	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49770.1	2e-25	bHLH family protein