PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s739461g003
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family B3
Protein Properties Length: 209aa    MW: 23391.1 Da    PI: 5.0946
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s739461g003genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B394.29.1e-3022105180
                        EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                        f+k ltpsdv+k++rlv+pk++ae++    g + e++  l++edesg+sW+++++y+ +s++yvltkGW++Fvk+++L++gD+ 
  PDK_30s739461g003  22 FEKPLTPSDVGKLNRLVIPKQHAEKYfpldGDSGEKGLLLSFEDESGKSWRFRYSYWTSSQSYVLTKGWSRFVKEKQLDAGDVA 105
                        99***************************9666668889*******************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.8E-3812104IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.98E-2819104IPR015300DNA-binding pseudobarrel domain
CDDcd100172.21E-2721104No hitNo description
PROSITE profilePS5086312.64722126IPR003340B3 DNA binding domain
SMARTSM010191.5E-1822115IPR003340B3 DNA binding domain
PfamPF023621.4E-2622105IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MNPHHHDQVE QEEAQDEREL MFEKPLTPSD VGKLNRLVIP KQHAEKYFPL DGDSGEKGLL  60
LSFEDESGKS WRFRYSYWTS SQSYVLTKGW SRFVKEKQLD AGDVATPARA VIRPNAALPW  120
SPAYYTTAAT SYLYVSSVQA VQQDCLLHAG DQVEEEVQKA APSPAPANSK RLRLFGVNLD  180
CGPDRPEPQP VQPAPWFMGQ SPDASSSQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A6e-4917111397B3 domain-containing transcription factor NGA1
5os9_B6e-4917111397B3 domain-containing transcription factor NGA1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008799674.11e-148B3 domain-containing protein Os11g0156000-like
SwissprotQ53QI03e-55Y1160_ORYSJ; B3 domain-containing protein Os11g0156000
TrEMBLA0A2H3YJI61e-146A0A2H3YJI6_PHODC; B3 domain-containing protein Os11g0156000-like
STRINGXP_008799673.11e-147(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24463889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36080.14e-51B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]