PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s741631g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family TALE
Protein Properties Length: 347aa    MW: 38878.6 Da    PI: 8.4788
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s741631g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox32.71.3e-101501871954
                        HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
           Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                        Fe   ++yp+ ++++ LAk++gL+ +qV++WF N R +
  PDK_30s741631g002 150 FEHflHPYPTDTDKQMLAKQTGLSRNQVSNWFINARVR 187
                        554459******************************88 PP
2BELL89.53.5e-291786372
               BELL  3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72
                       +e++ +k++L+s+l+eV+++Ykqy++q+q+vi sFe v gl +a+pY+s+Alka+ +hFr+Lk +i++q+
  PDK_30s741631g002 17 AEHRWQKTRLVSMLDEVYRKYKQYYQQVQAVITSFESVSGLSTAAPYASMALKAMLKHFRSLKSKISNQL 86
                       588999*************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.6E-6184IPR006563POX domain
PfamPF075262.3E-261583IPR006563POX domain
PROSITE profilePS5007112.406128191IPR001356Homeobox domain
CDDcd000861.56E-13131192No hitNo description
SMARTSM003896.0E-11131195IPR001356Homeobox domain
SuperFamilySSF466891.84E-17133199IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-28134195IPR009057Homeodomain-like
PfamPF059201.5E-19148187IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MEGFAGGRLE EGGVSGAEHR WQKTRLVSML DEVYRKYKQY YQQVQAVITS FESVSGLSTA  60
APYASMALKA MLKHFRSLKS KISNQLRHTN KVLGIESLNR EESSSFGLIS GGVGHERAPN  120
NSGTFGQAHV WRPQRGLPER AVSVLRAWLF EHFLHPYPTD TDKQMLAKQT GLSRNQVSNW  180
FINARVRLWK PMVEEIHSLE MQQLQKASAA GRNHNDEQTN LPSESIATPS SSQPLHGTSS  240
HKHQNLSTKL FQDDLPRIPN HLREPLNFVY DDLSSHQHGM DVAGGANGNV SLTLGLHRNN  300
GVCLAEPLPM NAVRCYGLED CSDAYVMGAF EEQDRHFGKD TWRAFPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A1e-16137195563Homeobox protein Meis2
3k2a_B1e-16137195563Homeobox protein Meis2
4xrm_A1e-16137195563Homeobox protein Meis2
4xrm_B1e-16137195563Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is involved in the preservation of the spiral phyllotactic arrangement leading to a regular pattern of organ initiation. Required for maintenance of stem cell fate in the shoot apical meristem, and is essential for specifying floral primordia and establishing early internode patterning events during inflorescence development. Acts as transcription repressor of AG expression in floral and inflorescence meristems. Is also responsive of the nuclear import of SHOOT MERISTEMLESS (STM). In the fruit, plays a central role in patterning by negatively regulating SHP expression in order to prevent replum cells from adopting a valve margin cell fate. {ECO:0000269|PubMed:12874117, ECO:0000269|PubMed:12897247, ECO:0000269|PubMed:13678595, ECO:0000269|PubMed:15019989, ECO:0000269|PubMed:15120075, ECO:0000269|PubMed:15155890, ECO:0000269|PubMed:16741748}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008801354.10.0BEL1-like homeodomain protein 9
SwissprotQ9LZM82e-71BLH9_ARATH; BEL1-like homeodomain protein 9
TrEMBLA0A2H3YNA10.0A0A2H3YNA1_PHODC; BEL1-like homeodomain protein 9
STRINGXP_008801354.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25283881
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27990.12e-63BEL1-like homeodomain 8
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Pabón-Mora N,Wong GK,Ambrose BA
    Evolution of fruit development genes in flowering plants.
    Front Plant Sci, 2014. 5: p. 300
    [PMID:25018763]
  3. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]
  4. Andrés F, et al.
    Floral Induction in Arabidopsis by FLOWERING LOCUS T Requires Direct Repression of BLADE-ON-PETIOLE Genes by the Homeodomain Protein PENNYWISE.
    Plant Physiol., 2015. 169(3): p. 2187-99
    [PMID:26417007]
  5. Bencivenga S,Serrano-Mislata A,Bush M,Fox S,Sablowski R
    Control of Oriented Tissue Growth through Repression of Organ Boundary Genes Promotes Stem Morphogenesis.
    Dev. Cell, 2016. 39(2): p. 198-208
    [PMID:27666746]
  6. Sehra B,Franks RG
    Redundant CArG Box Cis-motif Activity Mediates SHATTERPROOF2 Transcriptional Regulation during Arabidopsis thaliana Gynoecium Development.
    Front Plant Sci, 2017. 8: p. 1712
    [PMID:29085379]
  7. Simonini S,Stephenson P,Østergaard L
    A molecular framework controlling style morphology in Brassicaceae.
    Development, 2018.
    [PMID:29440299]