PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s742801g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family WRKY
Protein Properties Length: 583aa    MW: 63893.2 Da    PI: 6.9228
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s742801g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.81.9e-32254311260
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                        dDgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkve++  d++++ei+Y+g+Hnh+k
  PDK_30s742801g002 254 DDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVEKNF-DGQITEIVYKGTHNHPK 311
                        8****************************************.***************85 PP
2WRKY107.56.6e-34421479159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        ldDgy+WrKYGqK+vkg+++prsYY+Ct+ gCpv+k+ver+++dp++v++tYeg+Hnh+
  PDK_30s742801g002 421 LDDGYRWRKYGQKVVKGNPNPRSYYKCTTVGCPVRKHVERASNDPRAVITTYEGKHNHD 479
                        59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.8E-29241312IPR003657WRKY domain
SuperFamilySSF1182904.05E-25247312IPR003657WRKY domain
SMARTSM007741.8E-34253311IPR003657WRKY domain
PfamPF031068.7E-25254310IPR003657WRKY domain
PROSITE profilePS5081123.41254312IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.0E-37406481IPR003657WRKY domain
SuperFamilySSF1182907.19E-30413481IPR003657WRKY domain
PROSITE profilePS5081138.721416481IPR003657WRKY domain
SMARTSM007741.1E-39421480IPR003657WRKY domain
PfamPF031062.2E-26422479IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009753Biological Processresponse to jasmonic acid
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MDSSTGSLET SANSHLTSTS LSFSSPFPTS FTELLAGVGD DNSVDRPRKP ASEGLSDLAG  60
QGRGGIPKFK SIPPPSLPIS PPPISPSSYF AIPNGLSPAE LLDSPVLLSS YIFPSPTTGT  120
FPSQAFNWRS TSGNPQQGVK EEDRAYSDFS FQPHTKPMIS QLASFQPSSA AVSTEEAFKG  180
LQPWSYHEIG NNNSELASQK TNISAVDMAP IRTSSSEIPT LQANSQSNNN GGYQPDYNHS  240
NQAAQTLREQ RKSDDGYNWR KYGQKQVKGS ENPRSYYKCT YPNCPTKKKV EKNFDGQITE  300
IVYKGTHNHP KPPPNRRNSA SSQAIQGCLP SEASDHSFGG RSGTLIDSVM TPDNSSASFG  360
EDDADMSSQR SNPGGVDFDE DEPDAKRWKK EGENEGTSAS GNRTVREPRV VVQTTSDIDI  420
LDDGYRWRKY GQKVVKGNPN PRSYYKCTTV GCPVRKHVER ASNDPRAVIT TYEGKHNHDV  480
PAARGNTNSS ISMAIRPSAI ANHANHGTAN SLFGGRLHAS ESQAPFTLEM LQSPPSFFCS  540
GYENSMNSFM NQPQHQQQRH MERMLPKTKE EPREDLFLES LLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-38243482778Probable WRKY transcription factor 4
2lex_A2e-38243482778Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:26025535). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:19199048, PubMed:26025535). Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (PubMed:15618416, PubMed:19199048, PubMed:26025535). {ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048, ECO:0000269|PubMed:26025535}.
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:15618416, PubMed:19199048). Slightly down-regulated by gibberellic acid (GA) (PubMed:15618416). Accumulates in response to jasmonic acid (MeJA) (By similarity). {ECO:0000250|UniProtKB:Q6B6R4, ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048}.
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0510083e-78KM051008.1 Elaeis guineensis isolate PL124 WRKY transcription factor 7 (WRKY7) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008809977.10.0WRKY transcription factor WRKY24-like
SwissprotQ6B6R41e-150WRK24_ORYSI; WRKY transcription factor WRKY24
SwissprotQ6IEQ71e-150WRK24_ORYSJ; WRKY transcription factor WRKY24
TrEMBLA0A2H3Z9440.0A0A2H3Z944_PHODC; WRKY transcription factor WRKY24-like
STRINGXP_008809977.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29923687
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.11e-103WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang ZL, et al.
    A negative regulator encoded by a rice WRKY gene represses both abscisic acid and gibberellins signaling in aleurone cells.
    Plant Mol. Biol., 2009. 70(1-2): p. 139-51
    [PMID:19199048]
  3. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]
  4. Zhang L, et al.
    Three WRKY transcription factors additively repress abscisic acid and gibberellin signaling in aleurone cells.
    Plant Sci., 2015. 236: p. 214-22
    [PMID:26025535]