PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s744271g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family HD-ZIP
Protein Properties Length: 160aa    MW: 18495.2 Da    PI: 9.771
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s744271g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.11.4e-1849102356
                        --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                        k++++t+ q++ Le  F k+r++   ++ +LA++lgL+ +qV vWFqNrRa++k
  PDK_30s744271g001  49 KKRRLTDAQVKFLEMSFGKERKLESGRKVHLASELGLDPKQVAVWFQNRRARHK 102
                        56689***********************************************99 PP
2HD-ZIP_I/II116.61.5e-3749131284
        HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84 
                        kkrrl++ qvk+LE+sF +e+kLe+ rKv+la+eLgl+p+qvavWFqnrRAR+k+kq+E++y +Lk+a+da+  e+++Le+ev
  PDK_30s744271g001  49 KKRRLTDAQVKFLEMSFGKERKLESGRKVHLASELGLDPKQVAVWFQNRRARHKSKQIEQEYLKLKSAHDAIIVEKCHLENEV 131
                        9*******************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.16344104IPR001356Homeobox domain
SMARTSM003896.3E-1747108IPR001356Homeobox domain
SuperFamilySSF466898.13E-1748107IPR009057Homeodomain-like
CDDcd000865.48E-1549105No hitNo description
PfamPF000464.9E-1649102IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.3E-1849102IPR009057Homeodomain-like
PRINTSPR000311.0E-57584IPR000047Helix-turn-helix motif
PROSITE patternPS00027079102IPR017970Homeobox, conserved site
PRINTSPR000311.0E-584100IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MTKAIPSQVE EELSYLMNFG ACSQRTEGET RTRRRRRKPK LDGAGEEAKK RRLTDAQVKF  60
LEMSFGKERK LESGRKVHLA SELGLDPKQV AVWFQNRRAR HKSKQIEQEY LKLKSAHDAI  120
IVEKCHLENE VCMHASLYHD TGAGLVSISE DPIMDRCHFR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13351RRRRKPKLDGAGEEAKKRR
23551RRKPKLDGAGEEAKKRR
396104RRARHKSKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008795628.13e-91homeobox-leucine zipper protein HOX12-like
SwissprotA2YN178e-40HOX14_ORYSI; Homeobox-leucine zipper protein HOX14
SwissprotQ7XI857e-40HOX14_ORYSJ; Homeobox-leucine zipper protein HOX14
TrEMBLA0A2H3Y9T66e-90A0A2H3Y9T6_PHODC; homeobox-leucine zipper protein HOX12-like
STRINGXP_008795628.11e-90(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP200638101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.12e-37homeobox protein 40
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]