PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s746191g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family C3H
Protein Properties Length: 255aa    MW: 26933.5 Da    PI: 8.9569
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s746191g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.54.2e-072043225
                       -S---SGGGGTS--TTTTT-SS-S CS
            zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                       k ++C+ f+ t  C++G++C+F H
  PDK_30s746191g001 20 KPKPCMKFFSTSGCPFGESCHFLH 43
                       7789******************** PP
2zf-CCCH33.85.6e-1186112127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        ykt+lC++f     Ck+GdrC+FaHg+
  PDK_30s746191g001  86 YKTKLCNRFNTAEGCKFGDRCHFAHGE 112
                        9************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.9E-81843IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.1921846IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-62045IPR000571Zinc finger, CCCH-type
SMARTSM003560.162045IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-52043IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-1685118IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-485112IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.49385113IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.2E-986116IPR000571Zinc finger, CCCH-type
PfamPF006426.9E-886112IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MVVIDDGKYV GQQSFSSAGK PKPCMKFFST SGCPFGESCH FLHYVPGGLS SLGLAPVISL  60
SAALASALQK KATCPVGDPS VMVNGYKTKL CNRFNTAEGC KFGDRCHFAH GEGELRSPNN  120
VSRGSKRPLP NGPTGTAPGF GNGGSYNFAN PTGYSGPPGI ISNLTAQGYV EANQPGVAGP  180
SIFSLITSWK HFKIGFGSDG AVPTSPREMD IGQKVQDFSP PSPKGKFQCI HDTENVLKKI  240
TKPEVASCDW MNHRA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026656954.11e-123zinc finger CCCH domain-containing protein 14-like isoform X1
TrEMBLA0A3Q0HR871e-122A0A3Q0HR87_PHODC; zinc finger CCCH domain-containing protein 14-like isoform X1
STRINGXP_008777214.13e-96(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.13e-13C3H family protein