PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s747141g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family HD-ZIP
Protein Properties Length: 254aa    MW: 29478.2 Da    PI: 4.5539
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s747141g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.55.6e-193992356
                       --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                       k++++t++q++ Le+ F  ++++  e++ +LAk lgL+ rqV +WFqNrRa++k
  PDK_30s747141g001 39 KKRRLTADQVQFLEKNFTLENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWK 92
                       56689************************************************9 PP
2HD-ZIP_I/II129.71.2e-4138128191
        HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                        ekkrrl+++qv++LE++F+ e+kLeperK +la++Lglqprqva+WFqnrRAR+ktkq+EkdyeaLk++yd lk+++e+L ke+e+L+ee+
  PDK_30s747141g001  38 EKKRRLTADQVQFLEKNFTLENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQMEKDYEALKSSYDVLKADHENLLKEKEKLKEEV 128
                        69**************************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.27E-193196IPR009057Homeodomain-like
PROSITE profilePS5007117.3463494IPR001356Homeobox domain
SMARTSM003892.1E-173798IPR001356Homeobox domain
CDDcd000865.05E-163995No hitNo description
PfamPF000462.0E-163992IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.1E-1940101IPR009057Homeodomain-like
PRINTSPR000319.2E-66574IPR000047Helix-turn-helix motif
PROSITE patternPS0002706992IPR017970Homeobox, conserved site
PRINTSPR000319.2E-67490IPR000047Helix-turn-helix motif
PfamPF021838.1E-1594135IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MMDIDNAHGI TTERSFCRPL ELEETGEENL EEFFHQTEKK RRLTADQVQF LEKNFTLENK  60
LEPERKIQLA KDLGLQPRQV AIWFQNRRAR WKTKQMEKDY EALKSSYDVL KADHENLLKE  120
KEKLKEEVLF LTEKLLQREK GDLQTYEIKV PPPLLQKLDF VSVSEEKKPD VHVLLCKPED  180
LSSANSTVSD SDSPRCTDGL LSPLLEPADT SNVFDQAGLS HADEDEEIKG CSFLKLEENS  240
CNYILPVDDQ AFWF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18694RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008775589.10.0homeobox-leucine zipper protein HAT5-like
SwissprotQ022833e-40HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLA0A2H3WYE40.0A0A2H3WYE4_PHODC; homeobox-leucine zipper protein HAT5-like
STRINGXP_008775589.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16055714
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.15e-35homeobox 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]