PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s747681g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

bZIP

Protein Properties

Length: 215aa MW: 23996.1 Da PI: 7.8846

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s747681g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.6	3.5e-10	21	68	5	52
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 kr++r NR +A rs +RK +i eLe+kv++L++e ++L +l PDK_30s747681g001 21 KRAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLF 68 9****************************************9988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.2E-14	17	81	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.645	19	82	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	5.4E-9	21	67	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	8.2E-11	21	75	No hit	No description
SuperFamily	SSF57959	2.95E-11	21	72	No hit	No description
CDD	cd14703	1.98E-20	22	71	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MEAKKAMTAE QLAELSALDP KRAKRILANR QSAARSKERK ARYISELERK VQTLQTEATT 60 LSAQLTLFQR DTTGLSAENA ELKIRLQAME QQAQLRDALN EALKQEVERL KIATGEISNL 120 GETYKMGPQH VSYSTPFYML PQQQEVHHDG IQFQPQFQQS QPNVSNHQFA HPAALPDMMQ 180 QDPLGRLQGL DISKGSLIVK SESSSISASE SSGTF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269\|PubMed:14704272}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008808308.2	1e-150	transcription factor RF2b-like
Swissprot	Q6S4P4	1e-109	RF2B_ORYSJ; Transcription factor RF2b
TrEMBL	A0A2H3Z5B9	1e-148	A0A2H3Z5B9_PHODC; transcription factor RF2b-like
STRING	XP_008808308.1	1e-151	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2683	36	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06850.1	3e-68	basic leucine-zipper 52

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Dai S,Zhang Z,Bick J,Beachy RN Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus. J. Gen. Virol., 2006. 87(Pt 3): p. 715-22 [PMID:16476995] Liu Y,Dai S,Beachy RN Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription. Biochem. J., 2007. 405(2): p. 243-9 [PMID:17371296] Dai S, et al. Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease. Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6 [PMID:19104064]